Mmel150109.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001720.1:257220-264791[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.9 1e+02 7.1 4.6 1 23 588 610 588 610 0.98 2 21 0.0015 0.17 15.8 1.3 1 23 616 639 616 639 0.96 3 21 0.036 4.2 11.5 3.1 1 23 702 725 702 725 0.96 4 21 0.0035 0.4 14.7 0.8 1 23 731 754 731 754 0.98 5 21 0.0043 0.5 14.4 2.4 1 23 760 783 760 783 0.98 6 21 0.0028 0.33 14.9 0.4 1 23 789 812 789 812 0.96 7 21 0.0069 0.81 13.7 3.1 1 23 818 841 818 841 0.98 8 21 6.1 7.1e+02 4.4 3.2 1 23 847 870 847 870 0.96 9 21 0.26 30 8.8 6.7 1 23 876 899 876 899 0.98 10 21 0.0073 0.85 13.6 1.0 1 23 905 928 905 928 0.96 11 21 0.00018 0.021 18.7 1.9 1 23 934 957 934 957 0.98 12 21 0.084 9.8 10.3 2.5 1 23 963 986 963 986 0.97 13 21 0.00098 0.11 16.4 0.4 1 23 992 1015 992 1015 0.96 14 21 0.022 2.6 12.1 4.4 1 23 1021 1044 1021 1044 0.98 15 21 0.075 8.7 10.5 1.9 1 23 1050 1073 1050 1073 0.98 16 21 0.52 61 7.8 1.2 1 23 1079 1102 1079 1102 0.98 17 21 0.015 1.7 12.7 5.0 1 23 1108 1131 1108 1131 0.96 18 21 0.079 9.2 10.4 0.1 1 23 1137 1160 1137 1160 0.96 19 21 0.0009 0.1 16.5 2.8 1 23 1166 1189 1166 1189 0.98 20 21 0.014 1.6 12.7 3.9 1 23 1195 1218 1195 1218 0.98 21 21 0.0002 0.023 18.5 0.6 1 23 1224 1247 1224 1247 0.97
Sequence Information
- Coding Sequence
- ATGTCTCAAGAAATTATTAAATTTGATGATTTGAATAATTCAAGTGACGTAAAAGAAGAATTCCAGGATGTATATTATCCAGATAATGAACTGTACCTTTCTGAAACTACTATCACAGATATTATTTATAAAAGCAATGGTGAATTAAATGGGTATGTTAGCAATGGCAAACTAACGGAATATGAAACGCTTTCTGTAGATCATATCAAAACAGACTTACCTTCATCTGATGTAAATGATACAGTAAACAACAATGTTAAAATAGAAGATGGAGTTAATTGTGATGATATACAAATTAAATTCTGTAATGAACTGCTGTTTTGTAACCGTTGCCATGAAGTCTATCAGGATTATTGCACCAAATGCAGAGTGGTTGTACATATTTTGAACAAAAACCCTTCTCATAATACATATGCCAGAGCAAGAGAATTACCAGAATATATCTTGGAAACTAGGGAGTCAATTGGAGATTTGGGAATTTTCTCTTTGAAAGTTATACCTGAAGAAGTAAGATTTGGTCCTTTCACTAGACTTATTTCAACAGGACTGCCTTTGAGAATAAGAGGAGGCCGGTTTGTGATTAGTGATGATAAATCGGAGCATCTGAATTGGATGCAATACATCAATCCTGCCAGAAATATTTACGAACAAAATTTACTACCGTTTCAATATGATGGCAAACTATATTATTGTAGCACTCGTAGAATTGAGGAAGGTGAAGAGCTGTTGGTGTATTTTGGTGAGAAATACGAAGATAATCTTCTTGAAAATGCGGAAATGGATTTTGTTCCCATCGCAAAACTAGATGTTGAAAATGTATTTGGGTGCACTTTTTGTTGCTTAGGATTTGGTTCAAAGGAATATTTAGCTGAACACAATGTTGTGTTTCATAGTGAAACTAATGAAACATTTTCTTGGACACGTTTTCTTTATTCAAAATGCCTTACCGATTTTCTTAAGAGTATGCGGACATGCATTTTGTGTATGGCTACTGTAACGGCAGTGCACGTCAAGCAGTTATTGAATACTGACATCGGTTTCCCCGATAGGCGCATTCCTCATTACCGAACGTTTCTGGAAGTAGCCAGACAATTACGTGAATGCGGACTGCATAATTATCTTTTCGACCGAGGAGTAAATTTGCCAGCAGACTTAGAGGAAGAAGCAGTAGCTATTGTTACAAGGGATCCAACTCTCAGTGTACGTCGAACCGCTAGACAACTAGGAGTGTCACGAACGACAGTTTGGCGAATTTTAAAACGTGAGGGCTTATATCACTATCGCAGGGGACACGGTTTGCTTGAGGCAGACCACTATGCTCGTCGAGTTTATTCTACCTGGACATTAAGACAGTCACGGCTTAATTTTAATTTCTGCAGAACAGTCCTCTGGACAGATGAATCTACGTTCACGAGAAGTGCTGTTACAAATCTGAGAAACCTGAACAGGTGGTCATCAGAAAATCCCAAAGCTATACGCCCATCTAAATTTCAACATGAATTTTCTATTAACGTTTGGGCGGCCTTAATCGATGACTTGTTGATTGGTCCTGTCGTTCTTCCTGGGAGGTTAAATGCGGACAATTATCTTAAATCTCTTATTGACGAACTGCCAGGTCTTTTAGAGGATGTCCCACTAAATGTTCGACGAGACATGTGGTTTCACATGAATGGGGCACCACCACATTTCGGAATTGCTGAGGTGGAAGTAGAAAGACGTTCATCTATGAGACGCAAGGTCGAAAGATGGAAGCGTGGAATGTACAAATGTACGCAATGCAAGTTCAAAACAATGTACAACGCCGACTTCAGGCACCACATTAACGAGCATTATGCGGTAAAAAATTTCAAATGTGAAATTTGTCACAGAAGATACAAGGCGAAGGAATCTCTCAAGGCGCATGTTGCAAAAATTCATATTGACAATGAAGGAAGAGATGTCCAAAAATATCCTGCGTGTGATTATTCCAAAGCTAATATTAAAAATATAAAAGGAAGATCTGTATATTCACATGATGGTACAAAACGAGTTTCAAAGTTTCAAATAAGGGAAAAATATCGCCTAAAATCTGTTATTAAAACAAAACGTTTGTTGACAGGCAAATATAAGTGCGAAAATTGCGAGTTTAAGACAAACCACAAGTCTAGTTTAGGAAGACACATAAAGGCAAAACATCTTAAATTACGCGATTATAAATGCATGGAATGTGAATACAAGGCAACTCAAAAGGCATATTTAGAAAATCACATGAAAGTCAAACATCTCAAATTATGGGATTATAAGTGCATGGAGTGTGAATACCAGACGAACTTCAAGTCAAATTTGCAAATGCACATAAAGACAAAACATATTAAATTAATCGATTATAAATGCATGGAGTGTGACTACAAGGCAACTTACAAGCCAAATTTAGAAGCACACATGAAAGCGAAACATCTTAAATTATATGATTATAAGTGCATGGAGTGTGAATACCAGACGAACGTCAAGTCACATTTGAAAGTGCACATAAAGACAAAACATCTTAAATTAAAGGATTATAAATGCATTGAGTGTGAATACCAGACAAATTTCAAGTCGTGTTTGGAACTACACATAAAGTCAAAACATCTTAAATTACGCGATTATAAATGCACGGATTGTGAATACCAGACGCATTTCAAGCGAAATTTGGAACACCACATAAAGTCAAAACATCTTAAATTACGCGATTATAAATGCATGGATTGTGACTACAGGGCAACTCACAAGTCAACTCTAGTAGCGCACACGAAAGCGGTACATCTTAAATTAAAGGATTATAAGTGCGAGGAATGTGACTACAAGGCAGTTCGCAAGTCACATTTAGATGCACACATGAAAACAAAACATCTTAAATTAAGAGATTATAAATGCCTGGAGTGTGAATACCAGACGAACATCAAGTCACATTTGAAACAGCACATAGAATCAAAGCATCTTAAATTACGAGATTATAAATGCGGGGAATGTGACTACAAGGCAACTCAAAAGTCAAATTTAGTAGGACACATGAAAGCGAAACATCTTAAATTAAGGGATTATAAGTGCATGGAGTGTGAATACCAGACGAGTTTCAAATCACATTTGAAACTACACATAAAGTCAAAACATCTTAAATTACTCGATTATAAATGCAAAGAATGTGAATACCAAACGATTTACAAGATAAGTTTTGAACAACACATAAAGTCAAAGCATCTGAAATTACGCGATTATAAATGCATGGAATGTGAATTCCAAACGAATTATGAGCCAAATTTTGAGCAACACATAAAGTCAAAACATCTTAAATTACGCGATCATAAATGCATGGAATGTGACTACAAGGCAAGTCGCAAGTCATGTTTAGAAAGACACATGAAAGCTAAACATCTTAAATTAAGGGATTATACGTGCATGGAATGTGACTACAAGGCAGCTTATAAGTCAACTTTAGTAGGACATATGAAAGCGGTACATCTTAAATTAAGGGATTATAAATGCATGGAATGTGACTACAAGGCAACTCAAAAGTCACATTTAGAAGGACACATGAAAACGAAACATCTTAAATTAAGGGATTATAAGTGCGTGGAGTGTGAATACCAGACGAGTTTCAAGTCACATTTGAAATTACACATAAAGTCAAAGCATCTTAAATTACGCGATTATATATGCATGGAATGTGACTACAAGGCAACTCAAAAGTCAAATTTAGTAAGACACATGAAAGTGAAACATCTTAAAACGGTTGTCTCATATACGTGA
- Protein Sequence
- MSQEIIKFDDLNNSSDVKEEFQDVYYPDNELYLSETTITDIIYKSNGELNGYVSNGKLTEYETLSVDHIKTDLPSSDVNDTVNNNVKIEDGVNCDDIQIKFCNELLFCNRCHEVYQDYCTKCRVVVHILNKNPSHNTYARARELPEYILETRESIGDLGIFSLKVIPEEVRFGPFTRLISTGLPLRIRGGRFVISDDKSEHLNWMQYINPARNIYEQNLLPFQYDGKLYYCSTRRIEEGEELLVYFGEKYEDNLLENAEMDFVPIAKLDVENVFGCTFCCLGFGSKEYLAEHNVVFHSETNETFSWTRFLYSKCLTDFLKSMRTCILCMATVTAVHVKQLLNTDIGFPDRRIPHYRTFLEVARQLRECGLHNYLFDRGVNLPADLEEEAVAIVTRDPTLSVRRTARQLGVSRTTVWRILKREGLYHYRRGHGLLEADHYARRVYSTWTLRQSRLNFNFCRTVLWTDESTFTRSAVTNLRNLNRWSSENPKAIRPSKFQHEFSINVWAALIDDLLIGPVVLPGRLNADNYLKSLIDELPGLLEDVPLNVRRDMWFHMNGAPPHFGIAEVEVERRSSMRRKVERWKRGMYKCTQCKFKTMYNADFRHHINEHYAVKNFKCEICHRRYKAKESLKAHVAKIHIDNEGRDVQKYPACDYSKANIKNIKGRSVYSHDGTKRVSKFQIREKYRLKSVIKTKRLLTGKYKCENCEFKTNHKSSLGRHIKAKHLKLRDYKCMECEYKATQKAYLENHMKVKHLKLWDYKCMECEYQTNFKSNLQMHIKTKHIKLIDYKCMECDYKATYKPNLEAHMKAKHLKLYDYKCMECEYQTNVKSHLKVHIKTKHLKLKDYKCIECEYQTNFKSCLELHIKSKHLKLRDYKCTDCEYQTHFKRNLEHHIKSKHLKLRDYKCMDCDYRATHKSTLVAHTKAVHLKLKDYKCEECDYKAVRKSHLDAHMKTKHLKLRDYKCLECEYQTNIKSHLKQHIESKHLKLRDYKCGECDYKATQKSNLVGHMKAKHLKLRDYKCMECEYQTSFKSHLKLHIKSKHLKLLDYKCKECEYQTIYKISFEQHIKSKHLKLRDYKCMECEFQTNYEPNFEQHIKSKHLKLRDHKCMECDYKASRKSCLERHMKAKHLKLRDYTCMECDYKAAYKSTLVGHMKAVHLKLRDYKCMECDYKATQKSHLEGHMKTKHLKLRDYKCVECEYQTSFKSHLKLHIKSKHLKLRDYICMECDYKATQKSNLVRHMKVKHLKTVVSYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -