Mmel143710.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melolontha melolontha
Gene Symbol
-
Assembly
GCA_935421255.1
Location
CAKXYX010001572.1:940425-942083[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0022 0.26 15.3 1.9 1 23 19 42 19 42 0.96
2 16 0.17 19 9.4 2.8 1 23 108 131 108 131 0.97
3 16 0.19 22 9.2 0.6 2 23 138 160 137 160 0.95
4 16 0.038 4.4 11.4 1.8 1 23 166 189 166 189 0.98
5 16 0.028 3.3 11.8 3.6 1 23 195 218 195 218 0.98
6 16 0.0017 0.2 15.6 2.4 1 23 224 247 224 247 0.98
7 16 5.7e-05 0.0067 20.3 1.8 1 23 253 276 253 276 0.98
8 16 0.012 1.4 13.0 1.7 1 23 282 305 282 305 0.97
9 16 0.00059 0.068 17.1 3.2 1 23 311 334 311 334 0.98
10 16 0.0059 0.68 13.9 2.9 1 23 340 363 340 363 0.98
11 16 0.00024 0.028 18.3 2.0 1 23 369 392 369 392 0.98
12 16 0.0035 0.41 14.6 2.3 1 23 398 421 398 421 0.97
13 16 0.0038 0.44 14.5 1.6 1 23 427 450 427 450 0.98
14 16 0.00026 0.03 18.2 1.3 1 23 456 479 456 479 0.98
15 16 0.00049 0.057 17.3 1.8 1 23 485 508 485 508 0.98
16 16 0.0056 0.65 14.0 1.5 1 23 514 537 514 537 0.98

Sequence Information

Coding Sequence
ATGTACAACGCCGACTTCAGGCATCACACTAAGGAGCATTACAAGGTGAAAATGCACAAATGTGGAATTTGTGATCGAAGATATAACGGGAAGAAATCTCTCAAGACGCACGTGGAAAAAATCCATATTAACAATGAAGGAAGAGATATCCAAAAATATTCTACATGTGACTATTCAAAAGCTAATAAAAATACAAAACAGGGATCGACACATTCACGCGATGGTGAAAAACAATACCAATGGACGAAATGCAAGTCCCAAACAAGGCCCAAATGTTACTTAAAATCACATATAAAAATAAAAGATTTGAACAGAGGCAAATATAAGTGCGCAAATTGCGAGTTTAAGACGTATTACAGGACTTACTTAGAAAGGCACACAAAAATAACCCATCTCATGGAAAGTAATAATAAATGTGCAGAGTGTGAATTTAAGACAAACTACAAACCAAGTTTAGTAAGACACATAAAAGCAAAACATTTGAAATCGAGGGATTATAAATGCATGCAGTGTGAATACCAGACGTACGCGAAGTCAAATTTGAATATGCACATCAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATATCAAACGCATAAGAAGTCAAATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCAGAGAGTGTGAATATCGAACGAATAACAAGTCAAAGTTGGAAATGCACATAAAGTCAAAACATCTTAATTTACACGATTATAAATGCAAGGAGTGTGAATATCAAACAAATAGGAAGTCAAATTTGGAAGTGCACATAAAGTCAAAACATCTTAAATTATGCGATTATAAATGCATCGAGTGTGAATATAAAACGAATAGGAAATCAGATTTGACAATGCACATAAAGTCGAAACATCTTAAATTACATGATTATAAATGCATGGAGTGTCAATACCAGACGTACTCGAAGTCAAATTTGAATAAGCACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATATCAAACGAATAAGAAGTCAAATTTTAAAATCCACATCAAGTCAAAACATCTTAAATTACACGATTATAAATGCAGAGAGTGTGAATATCGAACGAATAACAAGTCAAATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACGCGATCATAAATGCAAGGAGTGTGAATATCAAACAAATAGGAAGGCAGATTTGGAACTGCACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAATAGCAAGTCGTATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATATCAAACAAATAGGAAGTCAAATTTGGAAGTGCACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCAGGGAGTGTGAATATCAAACGAATAACAAGTCAAATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACTCGATTATAAATGCGTGGAGTGTGAATACCAGACGTATAGCAAGTCGTATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACAGATTATAAATGAATGGAGTGTGAATATCAAAAAATAG
Protein Sequence
MYNADFRHHTKEHYKVKMHKCGICDRRYNGKKSLKTHVEKIHINNEGRDIQKYSTCDYSKANKNTKQGSTHSRDGEKQYQWTKCKSQTRPKCYLKSHIKIKDLNRGKYKCANCEFKTYYRTYLERHTKITHLMESNNKCAECEFKTNYKPSLVRHIKAKHLKSRDYKCMQCEYQTYAKSNLNMHIKSKHLKLHDYKCMECEYQTHKKSNLEMHIKSKHLKLHDYKCRECEYRTNNKSKLEMHIKSKHLNLHDYKCKECEYQTNRKSNLEVHIKSKHLKLCDYKCIECEYKTNRKSDLTMHIKSKHLKLHDYKCMECQYQTYSKSNLNKHIKSKHLKLHDYKCMECEYQTNKKSNFKIHIKSKHLKLHDYKCRECEYRTNNKSNLEMHIKSKHLKLRDHKCKECEYQTNRKADLELHIKSKHLKLHDYKCMECEYQTNSKSYLEMHIKSKHLKLHDYKCMECEYQTNRKSNLEVHIKSKHLKLHDYKCRECEYQTNNKSNLEMHIKSKHLKLLDYKCVECEYQTYSKSYLEMHIKSKHLKLQIINEWSVNIKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00990186;
90% Identity
-
80% Identity
-