Mmel065434.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000542.1:940177-944249[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 6.4 7.4e+02 4.4 3.7 1 23 301 323 301 323 0.97 2 20 0.017 2 12.5 1.9 1 23 329 352 329 352 0.96 3 20 4.1 4.7e+02 5.0 4.7 1 23 419 442 419 442 0.97 4 20 0.0098 1.1 13.2 1.4 1 23 448 471 448 471 0.96 5 20 0.0055 0.64 14.0 4.2 1 23 477 500 477 500 0.98 6 20 0.0024 0.28 15.2 1.5 1 23 506 529 506 529 0.98 7 20 0.00056 0.065 17.2 0.3 1 23 535 558 535 558 0.96 8 20 0.04 4.6 11.3 3.4 1 23 564 587 564 587 0.98 9 20 0.09 11 10.2 3.5 1 23 593 616 593 616 0.98 10 20 0.0073 0.85 13.6 0.8 1 23 622 645 622 645 0.98 11 20 0.0041 0.47 14.4 5.1 1 23 651 674 651 674 0.98 12 20 0.016 1.8 12.6 1.8 1 23 680 703 680 703 0.98 13 20 0.00095 0.11 16.4 2.2 1 23 709 732 709 732 0.98 14 20 0.0034 0.39 14.7 1.5 1 23 738 761 738 761 0.96 15 20 0.00091 0.11 16.5 1.1 1 23 767 790 767 790 0.96 16 20 0.0036 0.42 14.6 2.6 1 23 796 819 796 819 0.96 17 20 0.0037 0.43 14.5 3.0 1 23 825 848 825 848 0.96 18 20 0.0011 0.12 16.3 0.9 1 23 854 877 854 877 0.98 19 20 0.0037 0.43 14.5 3.0 1 23 883 906 883 906 0.96 20 20 0.052 6.1 10.9 0.4 5 23 931 950 929 950 0.93
Sequence Information
- Coding Sequence
- ATGGTAGTATGGATTAGAGGCCATACAGATTGGTTGCATGTTCGTAATGAAACCGAGATATATGGCAGTGCCTGTTTATTAAGTTTAAGGCATCCACAAAAGTGTAATGTGCAGAGACATATTTCATCGAAAACTCATCAAGATAACCTTAACAATCCAGTTCTCAAGAGGTTTCTTACAAAATATACTGATCGTCATATACCAGATGAATCTACTTTACGTAAATACTACTTACCAAAATGTTATTTGAGAACTATTGAAAAAATACGAACCAACCTATCTGGTCATTATCTTTGGGTAAGGGCAGACGAAACAACGGATGTAATGGGACGATACGTGTTAAATGTAGTTGTTGGTATTCTTCATCCGACAACTTCATACCAACCATACTTAATTGCAACAAAAATATTGCAAGTTCTAAATGGTGAAACAGTTGCAGAAGTAATTGATCAATGTATTCATTATATTCTGTCATCGGATAACAACTATAAAGACAAGATGCTACTATTTTTGACTGATGCGACAGCTTATATGTTAAAAACAGGGAAGTTATTAAAGCAATCTTATCCCAATATGCTACACGTTACCTGTGCAGCACATATACTACACAGAGTATGTGAATATATCAGGGGTCCATTTCCAAATCCGATTGAAAAATCTGTACATTCAAAGTATGGTGCACTTTTGCAACACTTTAATCACACGCCTATCATCAGTTGTAATGTGGAACGGACATTTTCTATTTTTATAGACCTTTTAACATCTAAAAGAGCCAATTTAACACAGGAACACCTTGAACAAATTTTATTTTACTCACTTTCGCCAACGCAGGTTCCTAAGCTAGAAACAGAAACGCGTTCATCTTTACGAAGCAAGGTCAAACGATGGAAGCGTGGAATATACAAATGTACGCAATGCAAGTTCAGGACAATGTTCAACGCCGACTTCAGGTACCATACTAATGAGCATTTTGAAGTAAAAATGTACAAGTGTGGATTTTGTCGCAGAAGATACAAGGCGAAAAAATCTCTTGAGACGCATATGGTAAAAATTCATGCCGAGAGTGCAGGAAGTGATGTCCAAAATTACTCTACGTGTGATTATTTCAAAGTTAATGTTAAGAATATGAAAAAGAAATCTGCACAATCATTTGCTGGTGAAAAACAATGTCAATCATCGAAATACAAATTTCAAACACGGAACAAATGTCACTTAAAATCACAGATCAAAGTAAAAGATCCCAACAGAGGCAAATATAAGTGCGCACATTGCGAGTTTAAGACATATTACAGGTCTTATTTAGGAATGCACACGAAAATGAAACATCTCGTGGAAAGTTATTATAAATGCAAGGAGTGTCAATACCAGACGAACTTCAAGTCAAGTTTGGAAGTACACACAAAGGCAATACATCTGAAGCAAAAGGCTTATAAATGCGCAGAATGTAAATACAATACAAATAACAGGTCACATTTAAAATTACACGTGAAAACGAAACATCTTAAAGAATTTAATTATAGATGCGGAGAGTGTGAATACAGGACAAATAGGAAGTTACATTTAGAAATACACATAAAGACAATACATCTTAAAGAACACGATTATAAATGTGCAGAGTGTGAATACAAGACAAACCGCAAGGCAAATTTAGCAAAACACATAAAGGCAATACATCTTAAAGTCGCCAATTATAAATGCGCAGAATGTGAATACAAAACAAACGAGAAGTATTGTTTGGAGAATCACATAAAGACAAAGCATCTTAAAATAAGAAATTATAAATGCGCAGAGTGTGAGTATAATACTAACCACGTTCGTTGTTTAGAAAGACACATTAAGACAGTACATCTTAAAATATGCGATTATAAATGCGCAGAGTGTGATTTCATGACAAATTACAAGTCAGTCTTAGTAGAGCACATGAAAACAAAACATCTTAAAGAACACGATTATAAATGCACAGAGTGTGAATACAAGACAAGTAGGAATAGGTGTTTGAAAGTACACATAAAGACGAAACATCTTAAAGAATATGATCATAAATGCCCAGAGTGTGAATTCATGACAAATTACAAGTCAGTCTTAGTAGAGCACATGAAAACAAAACATCTTAAAGAACACGATTATAAATGTACAGAATGTGAATACAAAACAAGTAGGAATTTATATTTAAAAGCACACATAAAGACGAAACATCTTAAAATAAGCGATTATAAATGCAGAGAGTGTGAATACAAGACAAACAACAAGCAAAGTTTAAAAAATCACATAAAGGCAATACATCTTAAAATAACCGATTATAAATGTGCAGAGTGTGAATACAAGACAGGCAATAAGTCACATTTAGAAAAGCACATAAAGGCAATTCATCTTAAAGTAACCGATTATAAATGCACTGAGTGTGAATACAAGACAAACCACAAGCAAAGTTTAAAAAATCACATAAACGCAATTCATCTTAAAGTATGCGATTATAAATGCACAGAGTGTGAATACAAGACAAACCACAAGCAAAGTTTAAAAAATCACATAAAGGCAATTCATCTTAAAGTAACCGATTATAAATGCACTGAGTGTGAATACAAGACAGGCGATAAGGCGTATTTACAAGTACACATAAAGACAAAACATCTTAAAGTATGCGATTATAAATGCACAGAGTGTGAATACAAGACAAACCACAAGCAAAGTTTAAAAAATCACATAAAGGCAATACATCTTAAAGTGACCAATTATAAATGCGCAGAGAACACAAAGGCAAAACATTATAAAACAAGCGATCATAAATTGCAGTGTGAATACAAGACACGCAATAAATCAAATTTAGAAAAACACATTACGTCAATACATCTTAACGAAACCAATTATAAGTGCGCAGACTGTGAAGACCAATTACAAATCGAACTTAGAAAAACACATTTAAAGTAA
- Protein Sequence
- MVVWIRGHTDWLHVRNETEIYGSACLLSLRHPQKCNVQRHISSKTHQDNLNNPVLKRFLTKYTDRHIPDESTLRKYYLPKCYLRTIEKIRTNLSGHYLWVRADETTDVMGRYVLNVVVGILHPTTSYQPYLIATKILQVLNGETVAEVIDQCIHYILSSDNNYKDKMLLFLTDATAYMLKTGKLLKQSYPNMLHVTCAAHILHRVCEYIRGPFPNPIEKSVHSKYGALLQHFNHTPIISCNVERTFSIFIDLLTSKRANLTQEHLEQILFYSLSPTQVPKLETETRSSLRSKVKRWKRGIYKCTQCKFRTMFNADFRYHTNEHFEVKMYKCGFCRRRYKAKKSLETHMVKIHAESAGSDVQNYSTCDYFKVNVKNMKKKSAQSFAGEKQCQSSKYKFQTRNKCHLKSQIKVKDPNRGKYKCAHCEFKTYYRSYLGMHTKMKHLVESYYKCKECQYQTNFKSSLEVHTKAIHLKQKAYKCAECKYNTNNRSHLKLHVKTKHLKEFNYRCGECEYRTNRKLHLEIHIKTIHLKEHDYKCAECEYKTNRKANLAKHIKAIHLKVANYKCAECEYKTNEKYCLENHIKTKHLKIRNYKCAECEYNTNHVRCLERHIKTVHLKICDYKCAECDFMTNYKSVLVEHMKTKHLKEHDYKCTECEYKTSRNRCLKVHIKTKHLKEYDHKCPECEFMTNYKSVLVEHMKTKHLKEHDYKCTECEYKTSRNLYLKAHIKTKHLKISDYKCRECEYKTNNKQSLKNHIKAIHLKITDYKCAECEYKTGNKSHLEKHIKAIHLKVTDYKCTECEYKTNHKQSLKNHINAIHLKVCDYKCTECEYKTNHKQSLKNHIKAIHLKVTDYKCTECEYKTGDKAYLQVHIKTKHLKVCDYKCTECEYKTNHKQSLKNHIKAIHLKVTNYKCAENTKAKHYKTSDHKLQCEYKTRNKSNLEKHITSIHLNETNYKCADCEDQLQIELRKTHLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -