Mmel005983.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000045.1:1314514-1317333[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.18 21 9.2 0.5 1 20 98 117 98 119 0.95 2 18 4.6 5.4e+02 4.8 1.3 1 19 203 221 203 226 0.95 3 18 1.3e-05 0.0015 22.3 2.1 2 23 294 315 293 315 0.97 4 18 8.5e-06 0.00098 22.9 1.0 2 23 330 351 329 351 0.97 5 18 5.9 6.8e+02 4.5 0.1 2 23 359 381 358 381 0.92 6 18 0.0045 0.53 14.3 0.2 2 23 386 407 386 407 0.96 7 18 0.047 5.5 11.1 0.0 1 23 429 451 429 451 0.96 8 18 0.042 4.9 11.2 4.2 1 23 475 497 475 498 0.95 9 18 0.019 2.2 12.3 0.6 1 23 508 530 508 530 0.98 10 18 8.3e-06 0.00096 22.9 7.0 1 23 558 580 558 580 0.99 11 18 7.6 8.8e+02 4.1 2.3 3 23 602 622 600 622 0.96 12 18 0.047 5.4 11.1 0.5 1 23 646 668 646 668 0.97 13 18 0.37 43 8.3 0.1 2 23 682 704 681 704 0.94 14 18 0.004 0.47 14.4 1.2 1 23 719 741 719 741 0.93 15 18 0.04 4.7 11.3 0.5 2 23 815 836 814 836 0.96 16 18 0.0018 0.21 15.5 2.9 1 23 843 866 843 866 0.95 17 18 0.00047 0.054 17.4 1.9 1 23 874 896 874 896 0.99 18 18 0.0018 0.2 15.6 0.6 1 23 914 937 914 937 0.98
Sequence Information
- Coding Sequence
- ATGCAGACAGATGGGTCTCATTTGGAGTCGGAAAACGAGCATTCAGAAAATTCGAACATTCAGAAAATACAATTTGCTGCTGGTTTACGTTTGAAACAAAAGTCTACTGGTTCTTCGACGCCGTCTTCAATTGAGGGCCCTCTGACATTAATCGAATTAGCTTACGTAGAACGTAGCAAAGCATTAGTATCTATGCTGCATAAATTTAGATGTGCTTGTCACAACGTCTCTTTTCCAACTGTTAAGCGTTTGTTCGCTCATTTACGTATGAGTTACACGTGGTTTCCAATATTTACATGCTACAACTGTGTTATAACTTTTTCGACTAGATCTTTGAATATGAGACACACCGGTAGATGTGCAAAACCATACTTGGAGAACAGCATGAAATTGGCTGAAATGAAAAAGCGCGATGAAGTGAAGATACGTTTGTACCAATATAGTAAATGCAATAAGTGCGAGAATTTGTATGCTTTTTACGAGGACTACTGCGAACACATCGATAGAGAGCATACATCAGAACCTCCTTATGTTTGCATTTGCACAAAACAATTTGAAAGTGCGGAAGGATTTAATCAACACAGGTATAATTCTTGCTACTTGAGCTACTACTGTGATGTTTGCTATAATATTTTTGAAACATTGGACGATTTTCGCATTCATTGCGAAGATGAACATGATAAAATAGAAGATTTCGTCTTTGTATCCCCAAATCCCACCTTCCAATATGTTACAAGAGAAGAAATCAATGCTTCGCGTAAAAGAACTCACGATGAGATGACACAATCGGCCGAAGCAAATGGTGAAATACTCGAACCTCAAGAAGATGGAAACGAAAGAAAGAAATTCATTCCAAATCGGGTGTATAATGAGCCGTCAAGTTGCGATTTATGTGATCGTCGCTTTTCTAATTATTATAGTTTGCGGAAACATATGAAGATGCACAGGAGAAGCAGCATAGCAAACGGTTGGAAGAGTAAACCTTCGACATGTGATAAATGTGGAAAAGTTTTCTCAACTTACTACAATATGATTAGACACTACAAGGTTCACGATGAAACGGAGAAACATCTCCAGTGCGCTCTATGCACTGATAAATTCAGATTAGTATCTGAATTGAAAGATCATTTGATATTGGTTCATGGTAGAGCAAATGTTTGTCAGGAATGCGGAAGGCAATTCGAATCTGTGAAAGAGTTAGAGCAACACAGAAGCGTTCACTTAAATATTAAAGTTTACCGAGATTCTAAAACTCAATCTTATAGAACAGGAACAAAGCCTAGATATACCTGCGATATATGTGAAAATGTTTTTGATACCGAAGTGGAGCTTAGTGAACACGTTGCTTTACACGGTAATATTTCTAATTTAGTAGATAAAGCTGATGAGAACGAACCAGAAGATAGGAAAGATTTCGGCAGGTTCTCCTGTTCTGATTGCGATAGGCATTACGTTAGTTATAAAGGATTGTGGTTACATAATAGAAGACATCACCCAGAGCGCAAACCACCACCTCAAACTTTCGAATGTCAATATTGCGACAGAGTTTTACAAACAAATGCAGCTTACCAAATGCACAAACAGATGCACGAAAGGATGCAAGAACGTATGCATAAACAATCTAATTTATCAGCACATATCAAGAAACCGGATGACGATGAAGAATCATATTTTACTTGCAAACATTGCTTCAAAGTGTTTTCCAATAAGTATAATTTGAAGACGCATCTGAAAACACACGGGATATACGTAAGCCCTGGAAGGACCTACTCGAAATCTGGCAAGTTCGTTAAAACATTCTGGTGTGATCTTTGTCATCAGGCTTGTCAAGGATATGCTGAATTGCAAAAACATAAACAAGAGCATATTAAAGAGAGAATGAAAGAAGCACATAAACGGGCGCCAGACGAAGAGGTGGATATCAAACCCGAAATATTCAATTGCGACATTTGCACGAAAGGATTTTTATCGAGAGGACAATTGCTATCCCACAAAGCTACCCACGAACAAGAAAGCAGACCTACACAAAAAAGAAACTTCGTATATTGTAAATATTGTAAAGTACCATTCCTTAACGTTGAAGGTTTAAATAGACACATGGAAAATGAACATAATGAAATTAGAATACAAAAGAATAAAACATTAACGAAAAAACATGCTTGTAATTTGTGTAAGAAAGTGTTTGATACTGCAGGCGCCTTGTGTTCACATCAAGGCTGGCATAAGCGTGGCAAATCGGAAAAACAACTTAAATCGGATAAAATACAACAACAACAACAGCAGCAGCTACAACAACAACAAAAACAACAGCAGCAACTTGCTAATAGTTCTACTGTTAAACACGAGTGTGCTTCCTGCAGTTTAAGTTTCTTAACAGATACTGCTTTGCAAATACATATTTTGGAAGCGCATAGAAACGTAAATGCCCAAATATTACCATCCAGATGTACAACCTGCAATATTGAGTTTAAAACGCAAGCTTCCTACGATGAGCACGCGAGATTGCACAGAACAACGTCGACAACCTTCCAATGTAAGTATTGTACAAAGAAGTTTAATAAGAGCGAGACTTTCAACATACACGTGAATGAATCTCATCCTGAGTACGCCGACGCTAAATTCAAGTGTCATCAATGTGAACGCATTTTTGAAAAGCAAAACGCATTGACGATTCACTTGAAGGTGCACGATAGACAGAGGTTGACAGGAGCTCCCATCAAGCAACCGAAATCTCATGTGTATACGTGCTCGATATGTCACTTAGGATTTGAAATTCCCAAGGATCTTCGAAATCACATAATAACAAAACATCCATTTTAA
- Protein Sequence
- MQTDGSHLESENEHSENSNIQKIQFAAGLRLKQKSTGSSTPSSIEGPLTLIELAYVERSKALVSMLHKFRCACHNVSFPTVKRLFAHLRMSYTWFPIFTCYNCVITFSTRSLNMRHTGRCAKPYLENSMKLAEMKKRDEVKIRLYQYSKCNKCENLYAFYEDYCEHIDREHTSEPPYVCICTKQFESAEGFNQHRYNSCYLSYYCDVCYNIFETLDDFRIHCEDEHDKIEDFVFVSPNPTFQYVTREEINASRKRTHDEMTQSAEANGEILEPQEDGNERKKFIPNRVYNEPSSCDLCDRRFSNYYSLRKHMKMHRRSSIANGWKSKPSTCDKCGKVFSTYYNMIRHYKVHDETEKHLQCALCTDKFRLVSELKDHLILVHGRANVCQECGRQFESVKELEQHRSVHLNIKVYRDSKTQSYRTGTKPRYTCDICENVFDTEVELSEHVALHGNISNLVDKADENEPEDRKDFGRFSCSDCDRHYVSYKGLWLHNRRHHPERKPPPQTFECQYCDRVLQTNAAYQMHKQMHERMQERMHKQSNLSAHIKKPDDDEESYFTCKHCFKVFSNKYNLKTHLKTHGIYVSPGRTYSKSGKFVKTFWCDLCHQACQGYAELQKHKQEHIKERMKEAHKRAPDEEVDIKPEIFNCDICTKGFLSRGQLLSHKATHEQESRPTQKRNFVYCKYCKVPFLNVEGLNRHMENEHNEIRIQKNKTLTKKHACNLCKKVFDTAGALCSHQGWHKRGKSEKQLKSDKIQQQQQQQLQQQQKQQQQLANSSTVKHECASCSLSFLTDTALQIHILEAHRNVNAQILPSRCTTCNIEFKTQASYDEHARLHRTTSTTFQCKYCTKKFNKSETFNIHVNESHPEYADAKFKCHQCERIFEKQNALTIHLKVHDRQRLTGAPIKQPKSHVYTCSICHLGFEIPKDLRNHIITKHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -