Mmel065622.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000542.1:1918655-1922812[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.12 14 9.8 2.0 1 23 19 42 19 42 0.96 2 19 3.9 4.5e+02 5.1 6.7 2 23 79 103 78 103 0.96 3 19 0.19 22 9.2 5.8 1 23 108 131 108 131 0.98 4 19 5.9 6.9e+02 4.5 2.8 1 23 137 160 137 160 0.93 5 19 0.47 55 7.9 0.7 2 23 167 189 166 189 0.96 6 19 0.037 4.3 11.4 0.3 1 22 195 216 195 216 0.97 7 19 0.052 6.1 10.9 2.7 1 23 219 242 219 242 0.98 8 19 0.00041 0.048 17.6 1.3 1 23 248 271 248 271 0.98 9 19 0.014 1.6 12.7 2.0 1 23 277 300 277 300 0.96 10 19 0.00024 0.028 18.3 2.1 1 23 306 329 306 329 0.98 11 19 0.0014 0.16 15.9 2.5 1 23 335 358 335 358 0.98 12 19 0.0052 0.6 14.1 0.9 1 23 364 387 364 387 0.98 13 19 0.00049 0.057 17.3 2.2 1 23 539 562 539 562 0.98 14 19 0.0027 0.32 15.0 0.4 1 23 592 615 592 615 0.96 15 19 0.0023 0.27 15.2 2.4 1 23 621 644 621 644 0.98 16 19 0.0014 0.16 15.9 0.8 1 23 650 673 650 673 0.98 17 19 0.0022 0.26 15.3 2.1 1 23 679 702 679 702 0.98 18 19 0.00051 0.06 17.3 2.9 1 23 708 731 708 731 0.98 19 19 0.048 5.6 11.1 0.1 5 21 741 757 740 758 0.92
Sequence Information
- Coding Sequence
- ATGTACAACGCCGACTTTAGGCACCACACTTTTGAGCATTACGAAGTGAAAATGTACAAATGCGGAATTTGTCGCAGAAGACACAAGACGAGGGTATCTCTTGAGACTCACATGGTAAAAATTCATGCTGACAATACAGAAAGAGATGCCCAAGATTACTCTACGCGTGACACATTCAAAGCTAATATTAAAAATAAGAAAGAGAGATCTGCACACTCACATGGAGATGAAAAACAATGTCCGAGCTCGAAATGCAAATTTCAAACGAGTTACAAATGTCACTTAAGAACACATATAAAAATAAAACATGCGAACAGGAAATATAAATGTACACATTGCGAGTTTAAGACATATTACAGGATTTATTTACAAATGCACATGAAAATGAAACATCTCATGGAAGGTTATCATAAATGCATGCCGTGTGAATACCAGACAAACTTCAATTCAAGTTTGGAAGTACACAGAAAGACAAAACATCTGAAACAAAAGCATGATAAATGCGCAGAATGTGAATACAAGCCAAATAACAGGTCATATTTAAAAGCACACGTGAAAAAGAAACATCTTAAAGAATATGATTATAAATGCGGAGAGTGTGAATACAAGACAAATGGGAAGTTAAATTTAAAAGTACACATAAAGACAACCGATTATAAGTGCGCAGCGTGTGAATACAAGACAAACTTCAAGCCACATCTCGAAAGACACATAAAGACAAAACATCTTAAAAAAAGCGATTATAAATGTGCAGAGTGTGAATACAAGACAAACTACAAGTCAAGCTTAGAAAAACACATAAAAAGAATTCATCTTAAAATAAGCGATTATAAATGCGCAGCATGTGAATACAAGACAAACAACAAGTCACATTTAGAAACACACATTAAGGCAAAACATCTTAAGGAATATGATTATAAATGTGGAGAGTGTAAATACAAGACAAACAACAAGTCACTTTTAGAAACACACATAAAGACAAAACATCTTAACGAATGTGATTATAAATGCGGAGAGTGTGAATACAAGACAAACAACAAGTTACATTTAGAAAGACACCTAAAGACAATACATCTTAAGGAATATAATTATAAATGCGGAAAGTGTGAATACAAGACAAATGGGAAGTTAAATTTAAAAGTACACATAAAGACAATACACACATTCCCTGCCGAAAGCGCCAATCGGCGGCCTTCGGTTCCGAGCGCGGTATGCCGATGCCGACCTTCGGATGGTATTAAACGTAAACGTCATCCACCTTCTTATTACAAACAATTAATAAAGGACGAACAGTTAGAAGCGTTTCTGAATTCAGATGGTAGCAGTGACTCGTACGAACCTACCGAGTCTGAAAGTAACTATAGTTTGGGTGACGACGGCAATGCTTCGGATATGAATACGCAAACCTCTACTACGACACCCGTTAACACGCAAAATACTAACAATGTGGAGCAATACGCTGTTAATAATTCTGTAATATGGGGCGACGTTCCTACTGAAATGCAACAGTTTCCGTTTTTGGGAAAACGAAAGCTGTTATTACCCGTCCCACCGGGTGCAAAGCCTATTGATTTTTTAAATATGATAGCGGATAATGGCTTTTACGTACACGCTTATAAATGCTCACAATGCCAATACAAAACAAACGACAAGTATAATTTAGGAAAACACATAAAAACAATACATCTCAAAATAACAGAGTGTGAATACAAGACAAATATCAAGCCATATCTCGAAAGACACATAAAGGCAAAACATCTTAGAAAAAGCGATTATAAATGCGCAGAGTGTGAATACAAGACAAATTACAAGGCAAGCTTAGAAAAACACATAAAAGCAATTCATCTTAAGATAAACGATTATAAATGCGCAGCGTGTGAATACAAGACAAATAGCAAGTCTTATTTAAAAAGACACATCAAGACAAAACATCTTAAAGAATATAATTATAAATGCGGAGAGTGTGAATACAAGACGAACAACAAACCACTTTTAGAAACACACATAAAGACAAAACATCTTAACGAATATGATTATAAATGCGGAGAGTGTGAATACAAGACAAACTATAAGTCACATTTAGAAGGACACCTAAAGACAATTCATCTTAAAATAAGCAATTATAAATGCGGAGAGTGTGAATATAAGACAAACTACAAGTCAAGTTTAAAGAAGCACAGGAAGACAATACATCTTAAAGTAACCGATTATAAATACGCAGAATGTGAATATAAGACTAACCAGAAGTCTAATTTAAAAAGACATATGGAGAAAACATCTTAA
- Protein Sequence
- MYNADFRHHTFEHYEVKMYKCGICRRRHKTRVSLETHMVKIHADNTERDAQDYSTRDTFKANIKNKKERSAHSHGDEKQCPSSKCKFQTSYKCHLRTHIKIKHANRKYKCTHCEFKTYYRIYLQMHMKMKHLMEGYHKCMPCEYQTNFNSSLEVHRKTKHLKQKHDKCAECEYKPNNRSYLKAHVKKKHLKEYDYKCGECEYKTNGKLNLKVHIKTTDYKCAACEYKTNFKPHLERHIKTKHLKKSDYKCAECEYKTNYKSSLEKHIKRIHLKISDYKCAACEYKTNNKSHLETHIKAKHLKEYDYKCGECKYKTNNKSLLETHIKTKHLNECDYKCGECEYKTNNKLHLERHLKTIHLKEYNYKCGKCEYKTNGKLNLKVHIKTIHTFPAESANRRPSVPSAVCRCRPSDGIKRKRHPPSYYKQLIKDEQLEAFLNSDGSSDSYEPTESESNYSLGDDGNASDMNTQTSTTTPVNTQNTNNVEQYAVNNSVIWGDVPTEMQQFPFLGKRKLLLPVPPGAKPIDFLNMIADNGFYVHAYKCSQCQYKTNDKYNLGKHIKTIHLKITECEYKTNIKPYLERHIKAKHLRKSDYKCAECEYKTNYKASLEKHIKAIHLKINDYKCAACEYKTNSKSYLKRHIKTKHLKEYNYKCGECEYKTNNKPLLETHIKTKHLNEYDYKCGECEYKTNYKSHLEGHLKTIHLKISNYKCGECEYKTNYKSSLKKHRKTIHLKVTDYKYAECEYKTNQKSNLKRHMEKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -