Mmel132672.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001382.1:177578-180538[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.00039 0.046 17.6 3.1 1 23 30 53 30 53 0.97 2 27 0.027 3.2 11.8 3.4 1 23 206 229 206 229 0.97 3 27 0.0041 0.48 14.4 2.1 1 23 236 259 236 259 0.98 4 27 0.14 16 9.6 4.8 1 23 265 288 265 288 0.98 5 27 0.51 59 7.8 1.5 1 23 294 317 294 317 0.97 6 27 2.2 2.5e+02 5.9 0.6 1 23 323 346 323 346 0.97 7 27 0.46 53 8.0 3.3 1 23 352 375 352 375 0.98 8 27 0.0044 0.51 14.3 1.4 1 23 381 404 381 404 0.98 9 27 0.0068 0.79 13.7 1.7 1 23 410 433 410 433 0.97 10 27 0.012 1.4 13.0 4.2 1 23 439 462 439 462 0.97 11 27 0.005 0.58 14.1 1.6 1 23 468 491 468 491 0.98 12 27 0.1 12 10.0 2.6 1 23 497 519 497 519 0.98 13 27 7.5 8.7e+02 4.2 2.7 1 23 524 547 524 547 0.96 14 27 0.035 4 11.5 1.5 1 23 553 576 553 576 0.96 15 27 0.014 1.6 12.8 1.8 1 23 582 605 582 605 0.97 16 27 0.0013 0.15 16.0 2.1 1 23 611 634 611 634 0.98 17 27 0.22 25 9.0 2.7 1 23 640 663 640 663 0.95 18 27 0.022 2.5 12.2 1.4 1 23 669 692 669 692 0.96 19 27 0.026 3 11.9 3.2 1 23 698 721 698 721 0.98 20 27 0.023 2.7 12.0 1.4 1 23 727 750 727 750 0.96 21 27 0.014 1.6 12.8 4.5 1 23 756 779 756 779 0.98 22 27 0.0019 0.22 15.5 0.6 1 23 785 808 785 808 0.98 23 27 0.002 0.24 15.4 2.0 1 23 843 866 843 866 0.97 24 27 0.0077 0.9 13.6 2.4 1 23 872 895 872 895 0.96 25 27 0.016 1.8 12.6 1.1 1 23 901 924 901 924 0.98 26 27 3.3 3.9e+02 5.3 1.3 1 23 930 953 930 953 0.94 27 27 0.005 0.58 14.1 1.6 1 23 959 982 959 982 0.97
Sequence Information
- Coding Sequence
- ATGTACAGATGTGCACAATGCAAGTTTAGAACAATATACGGCGCCGACTTCAGACACCACACTAACGAGCATTGCGAGGTGAAAATGTACAAATGTGGAATTTGTCACAGGAGATACAAAACGAAGGAATGGCTTAAGACGCACGTGTTAAGAAATCATGTTAACAATGCAGGAAGGGGTATCCAAAAATACACTACCTGTGACTATTTCAAAGCAAATATTAGAAATATAAAAGGGAGATCTCCACGCTCACCTGGTGAAAAACAATGTCAATGCACGAAGTGTATATTTCAAACAAGGAACAAACCTCACTTAAAATCACTTGTCAGAATGAAACATATGAACAGAAGGAAATATAAGTGCTTAAATTGCGAATTTAAGACATATTGCAGGAGTTATTTAGAAAAGCACATCAAAATAAAGCATCTCTTGGAAACTAATTCTAAATGCCCAGAGCGTGAAAACGAAACAAACTATAAATCAAGTTTAGTAGGACATAAAAACGCAAACTATTTTAAACAAAAGGATTATAGATGCGCCGAGGGTGAATTCAACACAAACAAAAAATCATATACTAAGAAACCCATGAAAGCAAAACATCTTAAAGAAAATGCTTATAAATGCATGGAATGTGAATTCAAAACATACTACAAGTCTAACTTGGAAAAACACAAAAAAATAAAACATCTTAAACAAAAAAAATATTATAAATGCGTGGAGTGTGAATTCAAGACAAACTACAAGTCATATTTACAAGTGCATATAAAAACAAAACATCGTAATGAGAGTGAGTATAAATGCATGGAGTGTGAATTCAAGACAAACCACAGGTCATATTTCCAAGTGCATATAAAATCAAAACATCTTAAAGGAAATCATTATAAATGCATGGATTGTGAATTCAAGACAAACATCAAGTCAATTTTGAAAAGACACATGAACATAAAACATCTTAAAGAAATGGATTATAAATGCATGGAGTGTGAATTCGAGACAAACTACAAGTCAGTTATAGAAGTGCATATAAAATCAAAACATCTTAAAGGAAATCATTATAAATGCATGGAGTGTGAATTCAAGACAAACATCAAGTCATTTTTAAAAAGACACGTGAAAAGAAAACATCTGAAACAAGAGGATTATAAATGCGTGGAGTGTGAATTCAAGACAAACTACAAGTCAGATTTAGAAATGCATATAAAAACAAAACATCTCAAAGGAAATGATTATAAATGCATGGAGTGTGAATTCAAGACAAGCGACAAGGCATATTTAAAAAAACACGTGAAAATAAAACATCTTAATGAAAATGGTTTTAAATGCATGGAATGTGAATTCAGAACATACTACAAGTCACACTTAGAAAGGCACATAAAAGTAAAACATATGAAACAAGAGGATTATAGATGCATGGAGTGTGAATTCAAGACAAACTACAAGTCAACTTTAGAAGCACACATAAAAACAAAACATCTTAATGAAAATGAGTATAAATGCATGGAGTGTGAATTCAAGACAAACTACAAGTCATATTTCCAAATGCATATAAAAGCACATGAAGGAAATGAGTACAAATGCATTGAGTGTGAATTCAAGACAAACATCAAGTCATTTTTAAAAAGACACGTGAAAAGAAAACATCTGAAACAAGAGGTTTATAGATGCGCAAACTGTGAATTCAAGACAAACTACAAGTCATATTTACAAGTGCATATAAAAGCAAAACATCTTAAAGGAAATAATTATCAATGCATGGAGTGTGAATTCAAGACAAACTACAGGTCAGATTTAACAAAACACGTGAAAATAAAACATCTTAAAGAAAATGATTATAAATGCATGGAGTGTGAATTCAAGACAAACGACAAGTCATATTTACAAAGACATATAAAAATAAAACATCTTAAAGGAAGCGAGTATAATTGCATGGAGTGTGAATTCAAGACACACAACAAGTCATATTTACAAGTGCATATAAAAGCAAAACATCGTAATGAGAATGAGTATAAATGCATGGAGTGTGAATTCAAGACAAACTACAAGTCATATTTACAAGTGCATATAAACGCAAAACATGTTAAAGGAATTGAGTATAAATGCACGGAGTGTGAATTCAAGACAAACATCAAGTCATCTTTAAAAAAACACGTGAAAAGAAAACATCTTAAGGATAATTATTATAAATGCATGGAGTGTGAATTCAAGACAAACTACAAGTCATATTTACAAGTGCATATACAAGCAAAACATCTTAAAGGAAATGATTATCAATGCATGGAGTGTGAATACAAGACAAACACCGAATCGTGTTTAAAAAGACACATAAAGAGAAAACATTTTAATGAAAATGGTTATAAATGCATGGAGTGTGAATTCATGACAAGCAACAAGTCGGGTTTAGAAGTGCATATAAAATCAAAACATCTTAAAGCAAATGATTATAAATGCATCGAGTGTGAATTCAAGACAAACATCAAGTCATATTTAAGTAGCCACGTGAAAAGAAAACATCTTAAAGGAAATTATTATAAATGCGTGGAGTGTGAATTCAAGACGAGCGACAAGTCATATTTAAAAAAACACGTGAAAATAAAACATCTTAAAGGAAATGATTATAAATGCATGGAGTGTGACTTCAAGACGAACTACAAGTCAAACTTAGAAAGTCATAGAAAAGCAAAACATTTTAATAAAAATTATTATAAATGCATGGAGTGTGAATTCAAGACAAACTACAAATCTGGTTTAGAAGTGCATATAAAATCGAAACATCTTAAAGCAAATGATTATAAATGCATCGAGTGTGAATTCAAGACAAACATCAAGTCATATTTAAATAGACACGTGAAAGCAAAACATCTTAAAGGAAATGATTATCAATGCATGGAGTGTGACTTCCAGACAAACTACAAGTCAAACTTAGAGAGTCATAGAAGAGCAAAACATTTTAATAAAAATTAG
- Protein Sequence
- MYRCAQCKFRTIYGADFRHHTNEHCEVKMYKCGICHRRYKTKEWLKTHVLRNHVNNAGRGIQKYTTCDYFKANIRNIKGRSPRSPGEKQCQCTKCIFQTRNKPHLKSLVRMKHMNRRKYKCLNCEFKTYCRSYLEKHIKIKHLLETNSKCPERENETNYKSSLVGHKNANYFKQKDYRCAEGEFNTNKKSYTKKPMKAKHLKENAYKCMECEFKTYYKSNLEKHKKIKHLKQKKYYKCVECEFKTNYKSYLQVHIKTKHRNESEYKCMECEFKTNHRSYFQVHIKSKHLKGNHYKCMDCEFKTNIKSILKRHMNIKHLKEMDYKCMECEFETNYKSVIEVHIKSKHLKGNHYKCMECEFKTNIKSFLKRHVKRKHLKQEDYKCVECEFKTNYKSDLEMHIKTKHLKGNDYKCMECEFKTSDKAYLKKHVKIKHLNENGFKCMECEFRTYYKSHLERHIKVKHMKQEDYRCMECEFKTNYKSTLEAHIKTKHLNENEYKCMECEFKTNYKSYFQMHIKAHEGNEYKCIECEFKTNIKSFLKRHVKRKHLKQEVYRCANCEFKTNYKSYLQVHIKAKHLKGNNYQCMECEFKTNYRSDLTKHVKIKHLKENDYKCMECEFKTNDKSYLQRHIKIKHLKGSEYNCMECEFKTHNKSYLQVHIKAKHRNENEYKCMECEFKTNYKSYLQVHINAKHVKGIEYKCTECEFKTNIKSSLKKHVKRKHLKDNYYKCMECEFKTNYKSYLQVHIQAKHLKGNDYQCMECEYKTNTESCLKRHIKRKHFNENGYKCMECEFMTSNKSGLEVHIKSKHLKANDYKCIECEFKTNIKSYLSSHVKRKHLKGNYYKCVECEFKTSDKSYLKKHVKIKHLKGNDYKCMECDFKTNYKSNLESHRKAKHFNKNYYKCMECEFKTNYKSGLEVHIKSKHLKANDYKCIECEFKTNIKSYLNRHVKAKHLKGNDYQCMECDFQTNYKSNLESHRRAKHFNKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -