Mmel136816.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- zfh1
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001449.1:237403-238884[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.036 4.2 11.5 0.9 1 20 101 120 101 122 0.88 2 12 0.28 33 8.6 1.8 1 23 126 148 126 148 0.97 3 12 8.2e-06 0.00095 22.9 2.9 1 23 154 177 154 177 0.97 4 12 0.00024 0.028 18.3 0.4 3 23 185 205 184 205 0.96 5 12 0.00046 0.053 17.4 2.0 1 23 212 234 212 234 0.97 6 12 0.0004 0.046 17.6 1.8 1 23 239 262 239 262 0.96 7 12 0.087 10 10.2 0.9 3 23 268 288 266 288 0.97 8 12 9.1e-06 0.0011 22.8 0.4 1 23 294 317 294 317 0.96 9 12 4.2e-06 0.00049 23.8 1.0 1 23 323 345 323 345 0.98 10 12 0.0012 0.14 16.1 2.6 1 23 353 377 353 377 0.96 11 12 6.1e-07 7.1e-05 26.5 0.6 1 23 383 405 383 405 0.99 12 12 0.044 5.1 11.2 11.4 1 23 411 433 411 433 0.98
Sequence Information
- Coding Sequence
- ATGGCTGATATTTGCAGATTATGTCTTGCTAGTATAGCAAATCCTTTGAATAAATTAGTTTCAGATGAAATTAATGATTCACATCAAACAAAAATGAAATTATTGATGCCCGAAATTGTAAATTATTTAATACAACATGAAACAAAGTTGGTGAATTTACAAGATGTTAAAGATTTAAAATTTCAGCAAGATAATTCCAAAGAAAATATACTTACAAGAAATATTAAAATAGAAGAAAATTACAATGAAGTAGAAGAAATATTTGAAGTACCTAGTATAAAAAACCAATTAAATATAAACTTTATATGTGATAAATGTCAAAAAACTTTCAGTGATAACAAAATATTTGAAAACCACAAGCAAGAGTGTGTTTTCTACAAGTGTAATCAGTGTGATAAAGAGCTATTAACAGAAGAAGAATTAGATAAACATTATCATTCCCATACAGTTTCCAAAACATACCAATGTGACATTTGCTCTAAATCGTATGTAAATTTTAGTAACTTAAAACGTCACATTCACAGTTCTCATTCTGACAAAACGCCAAATATTTGTGATATTTGTAATAAGAGATACTCATCAAAAGAAGGCCTTGAAAGACACAAATATATTCATCAGGACAGAGAAAGAAAATTTGCTTGCAAAATCTGTAATAGTACTTTTTTTAAACAATATCAGTTAAAAAATCACCAATTAATACATATAAATGGGATCCATAAGTGTTCTGTTTGTGCAAGAATGTTTAGTCTTGCCAATAATTTAAAACGTCATATGATAAATAAACATTTCGGAAAGAGTATTTGTGATACCTGTGGTTTAAGATGTGGTTCAAAAAGTATTTTAGTAGAACATCAGCGTACTCATACAGGCGAACGTCCTTTTAGTTGTGAAAAGTGTGGCAAGAGGTTCGCACAAAGAAGTACATTGATTGGACATATAAAGTTAATTCATGAAGATAAAAAACCATATGCATGTGACAGGTGTGGAAAATCATTTCCCCTGAGGAGTTCCTTAACTAAACACATGTTCACACATAAGAATGAATTGGAGAAAAAATTCATTTGCTCTCATGATGAATGCAATAAAACATTTTGGAGGAATACTGATCTTTTGAGACACATGCGATATCATTTGGACGCCAGAATATATAAGTGTTCAATTTGTGATACAACTTTTATTGAATCTTCAGGTTTAAAAAGACATATGAAAGTTCACACTGGTGAGAAGCCCTTTGAGTGCCAAACATGTCATCGACACTTCAATCAGAAATGTAATTTGCATAAACATTTAATATCGCATATGCCTGTTAAAAATTTTAAAAAGTAA
- Protein Sequence
- MADICRLCLASIANPLNKLVSDEINDSHQTKMKLLMPEIVNYLIQHETKLVNLQDVKDLKFQQDNSKENILTRNIKIEENYNEVEEIFEVPSIKNQLNINFICDKCQKTFSDNKIFENHKQECVFYKCNQCDKELLTEEELDKHYHSHTVSKTYQCDICSKSYVNFSNLKRHIHSSHSDKTPNICDICNKRYSSKEGLERHKYIHQDRERKFACKICNSTFFKQYQLKNHQLIHINGIHKCSVCARMFSLANNLKRHMINKHFGKSICDTCGLRCGSKSILVEHQRTHTGERPFSCEKCGKRFAQRSTLIGHIKLIHEDKKPYACDRCGKSFPLRSSLTKHMFTHKNELEKKFICSHDECNKTFWRNTDLLRHMRYHLDARIYKCSICDTTFIESSGLKRHMKVHTGEKPFECQTCHRHFNQKCNLHKHLISHMPVKNFKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -