Mmel064423.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000534.1:2330561-2332987[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00056 0.065 17.1 2.3 1 23 19 42 19 42 0.96 2 23 0.097 11 10.1 2.3 1 23 108 131 108 131 0.97 3 23 0.0028 0.33 14.9 0.8 1 23 166 189 166 189 0.98 4 23 0.03 3.5 11.7 0.4 1 23 224 247 224 247 0.98 5 23 0.029 3.4 11.7 0.4 1 23 253 276 253 276 0.98 6 23 0.028 3.3 11.8 0.3 1 23 282 305 282 305 0.98 7 23 0.00059 0.068 17.1 1.2 1 23 311 334 311 334 0.98 8 23 0.019 2.2 12.3 2.4 1 23 340 363 340 363 0.98 9 23 0.0005 0.058 17.3 1.2 1 23 369 392 369 392 0.98 10 23 0.21 24 9.0 0.6 1 23 398 421 398 421 0.98 11 23 0.03 3.5 11.7 0.4 1 23 427 450 427 450 0.98 12 23 0.03 3.5 11.7 0.4 1 23 456 479 456 479 0.98 13 23 0.001 0.12 16.3 1.0 1 23 485 508 485 508 0.98 14 23 0.0029 0.34 14.9 1.4 1 23 514 537 514 537 0.98 15 23 0.1 12 10.0 2.4 1 23 543 565 543 565 0.99 16 23 0.0052 0.6 14.1 2.8 1 23 571 594 571 594 0.98 17 23 0.21 25 9.0 2.3 1 23 600 623 600 623 0.98 18 23 0.02 2.3 12.3 3.4 1 23 629 652 629 652 0.98 19 23 0.081 9.4 10.3 0.4 1 23 658 681 658 681 0.98 20 23 0.044 5.2 11.2 0.5 1 23 687 710 687 710 0.98 21 23 0.012 1.4 13.0 0.6 1 23 716 739 716 739 0.98 22 23 0.099 12 10.1 2.5 1 23 745 768 745 768 0.98 23 23 0.022 2.5 12.1 1.9 1 23 774 797 774 797 0.98
Sequence Information
- Coding Sequence
- ATGTACAACGCCGAGTTCAGGCACCACACTAACGAACATTACAAGGCGACAATGCACAAATGCGGAATTTGTGGTCGAAGATATAAGGGGAAGAAGTCTCTCAAGACGCACCTGGAAAAAATTCATATTAACAATGAAGACAGAGATATCCCAAAATATTATGCGTGTGACTATTCAAAAGCTAATAAAGATATAAAAGAGAGATCTACACATTCACAAAATGGTGAAAAACAATGTCAATGCAGGAAATGCAAGTTTCAAACAAGGCACAAATGTCACTTAAAATCACTTATAAAAATAAAAGATTTGAACAGAGGCAAATATAAGTGCGCAAATTGCGAGTTTAAGACATATTACCGGACTTATTTAGAAAGGCACTTGAAAATAAACCATCTCATGGAAAGTAATTATAAATGCGCAGAGTGTCAATTCGAAACAAAGCACAAGTCAAGTTCAGGAAGACGCATAAAGTCAGAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAGTATCAGACGAACGTGAAGGCAAATTTGGAAAGACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGACTACCAGACGAACTGCAAGACACGTTTGGATATACACATAAAGACAAAACACCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACATCAAGGCAAATTTGGAAGTACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACATCAAGGGAAATTTGGAAGTACACATAAAGTCAAAACATCTTAAATTATACGATTATAAATGCATGGAGTGTGAATACCAGACGAACATTAAGGCAAATTTGGAAGTACACATAAAGTCACAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGTACAATAACGCAAATTTGGAAAGACACATAAAGACAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAACACCAGACGTACAAAAAGGCAAATTTGGAAATACACATAAAGACAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATATCAGACGAACAACAAGGCAAATTTGGAAAGACACATAAAGTCAAAACATCTTAAATTACACAATTATAAATGCATGGAGTGTGACTACCAGACGAACATCAAAGCATATTTGGATGTACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACATCAAGGCAAATTTGGAAGTACACATAAAGTCAAAACATCTTAAATTACATGATTATAAATGCATGGAGTGTGAATACCAGACGAACATCAAGGCAAATTTGGAAGTACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATATCAAACGAATAGGGAGTCAGATTTGGAAAGACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCGCGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAAGTCACATAAAGACCAAACATCTTAAATTAAACGATTATAAATGCGTGGAGTGTGAATACCAGACGAACATCAAGGCACATTTGAAAAGTCACGTAAAGAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTAAATTCACGACGAACTACAAGGAAAGTTTAGAAAAACACATAAAGTCAAAACATATTAAATCATGGGATTATAAATGCATGGAGTGTGACTACCAGACGAACATCAAAGCATGTTTGGAAACACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACAAATTACAAGAAAAGCTTAAAAAATCACATAAAGAGAAAACATCTTAAATTATGCGATTATCAGTGCATGGAGTGTGAATTCCAGACGAACATCAAGGCAAATTTGGAAGTACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACGTGAAGGCACTTTTGGAAAGCCACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACAAACAAAAAGGCAGATTTGGAAATACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAGTACCAGACGTACAAGAAGGTATATTTGGAAAGACACGTAAAGAGAAAACATCTTAAATTACACGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTCAAGGCACATTTGGAAATTCACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCAATGGAGTGTGA
- Protein Sequence
- MYNAEFRHHTNEHYKATMHKCGICGRRYKGKKSLKTHLEKIHINNEDRDIPKYYACDYSKANKDIKERSTHSQNGEKQCQCRKCKFQTRHKCHLKSLIKIKDLNRGKYKCANCEFKTYYRTYLERHLKINHLMESNYKCAECQFETKHKSSSGRRIKSEHLKLHDYKCMECEYQTNVKANLERHIKSKHLKLHDYKCMECDYQTNCKTRLDIHIKTKHLKLHDYKCMECEYQTNIKANLEVHIKSKHLKLHDYKCMECEYQTNIKGNLEVHIKSKHLKLYDYKCMECEYQTNIKANLEVHIKSQHLKLHDYKCMECEYQTYNNANLERHIKTKHLKLHDYKCMECEHQTYKKANLEIHIKTKHLKLHDYKCMECEYQTNNKANLERHIKSKHLKLHNYKCMECDYQTNIKAYLDVHIKSKHLKLHDYKCMECEYQTNIKANLEVHIKSKHLKLHDYKCMECEYQTNIKANLEVHIKSKHLKLHDYKCMECEYQTNRESDLERHIKSKHLKLHDYKCAECEYQTNFKSSLESHIKTKHLKLNDYKCVECEYQTNIKAHLKSHVKKHLKLHDYKCMECKFTTNYKESLEKHIKSKHIKSWDYKCMECDYQTNIKACLETHIKSKHLKLHDYKCMECEYQTNYKKSLKNHIKRKHLKLCDYQCMECEFQTNIKANLEVHIKSKHLKLHDYKCMECEYQTNVKALLESHIKSKHLKLHDYKCMECEYQTNKKADLEIHIKSKHLKLHDYKCMECEYQTYKKVYLERHVKRKHLKLHDYKCVECEYQTNFKAHLEIHIKSKHLKLHDYKCNGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00989783;
- 90% Identity
- -
- 80% Identity
- -