Mmel056686.3
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000473.1:1702281-1704530[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.5 4.1e+02 5.2 5.3 1 23 42 64 42 64 0.97 2 22 0.001 0.12 16.3 2.0 1 23 70 93 70 93 0.96 3 22 0.0055 0.64 14.0 1.8 1 23 159 182 159 182 0.97 4 22 0.0058 0.67 14.0 1.8 1 23 189 212 189 212 0.96 5 22 0.0035 0.4 14.7 1.5 1 23 218 241 218 241 0.98 6 22 0.0002 0.023 18.6 0.9 1 23 247 270 247 270 0.98 7 22 0.035 4.1 11.5 2.3 1 23 276 299 276 299 0.98 8 22 0.12 14 9.8 2.1 1 23 305 328 305 328 0.95 9 22 0.014 1.6 12.8 2.9 1 23 334 357 334 357 0.97 10 22 1.1 1.3e+02 6.8 5.2 1 23 363 386 363 386 0.98 11 22 0.00069 0.08 16.9 0.8 1 23 392 415 392 415 0.98 12 22 0.056 6.6 10.8 3.4 1 23 421 444 421 444 0.98 13 22 0.1 12 10.1 0.9 1 23 450 473 450 473 0.96 14 22 0.0014 0.16 15.9 0.9 1 23 479 502 479 502 0.96 15 22 0.02 2.3 12.3 0.6 1 23 508 531 508 531 0.96 16 22 0.0072 0.83 13.7 1.1 1 23 537 560 537 560 0.98 17 22 0.048 5.6 11.1 2.7 1 23 566 589 566 589 0.97 18 22 0.034 4 11.5 0.9 1 23 595 618 595 618 0.96 19 22 0.072 8.3 10.5 1.7 1 23 624 647 624 647 0.98 20 22 0.0017 0.2 15.6 2.0 1 23 653 676 653 676 0.98 21 22 0.0064 0.74 13.8 1.5 1 23 682 705 682 705 0.98 22 22 0.004 0.46 14.5 2.6 1 23 711 735 711 735 0.94
Sequence Information
- Coding Sequence
- ATGATTAATTCGATTTCATTTAATTTCAGACACTGCGTACTTCCTACACAGAAAGTTGTCGAGGGAGAAGTAGAAAGACGTTCATTTGTAAGAAGCAAGGTCAAAGGATGGAAGCGTGGAATATACAGATGTACGCAATGCAAGTTCAAGACAATGTACAACGCCGACTTCAGGCACCACACTAACGAACATTACAAAGTAAAAATGTACAAATGTGGAATTTGTAATCGAAGATATAAGGGGAAGAAATCTCTCAAGACGCACGTGGAAAAAACTCATATTAACAATGAAGGAAGAGATACACACAAATATTCTGCATGTAACTATTCCAAAGCTAATGAAAATGCAAAACAGAGATCTACACATTCACATAATGGTGGAAAACAATGTCAAGGCGCGAAATGCAAGTTTCAAACAAGGCACAAATGTCACTTAAAATCGCCTATAAAAAGAAAAGATTCGAGCAGAGGCAAATATAAGTGCGCAAATTGCGGGTTTAAGACATATTACAGGACTTATTTAGAAAGGCACATAAAAATAAACCATCTCATGGTGGAAAGTAATTATAAATGCATGAAGTGTGAATTCGTAACTAAGTTCAAGTCAAGTTTAGCAAGACACATAAAGGCAAAACATCTTAAATTAAACAAATATAAATGCATGGAGTGTGAATACCAGACGATCATCAAATCTAATTTAAAACGGCACATAAAGTCAAAACATCTTGAAACAAGCGATTATAAATGCGCAGATTGTGAATATGAGACGAATAGGAAGTCAAATTTGGAAATGCATATAAAGTCCAAACATCTTAAATCAAGCGATTATAAATGCGTGAAGTGTGAATACCAGACGAACTTTAAGTCACTTTTAGGAAAACACATAAAGACAAAACATCTTAAATTACGAGATTATAAATGCATGGAGTGTGAATTTCAGACGAACTTTACTTCAAATTTGAGAAAACACGTAAAGGCAAAACATCTTAAATCAAGGGATTATAATTGCATGGAGTGTAAATACCAGACGAACTTTAGGATGAACTTAGAAAGACACATGAAAACAAAACATCTTAAATTATGGGATTATAAGTGCATGGAGTGTGAATACCAGACGAACTTCAAAACTTGTTTAAAAATGCACATCAAGTCGAAACATCTTAAAACAAGAGATTATAAATGCATGGAGTGTGAATATCAGGCGAATAGGAAGTCAAATTTGGAAATACACATAAAGACAAAACATCTTAAATCCAGCGATTATAAATGCATGGAATGTGAATATCAGACGAACATCAAGACACATTTAAAAAGACACATTATGTCAAAACATCTTAAATCCAGCGATTTTAAATGCATGGAGTGTGAATATCAGACGAACTTCAAGTCAAGTTTAGAAGGACACATAAAGGCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTCTAAGTCAAGTTTAGAGAAACACATAAAGGCAAAACATCTTAAATCAAACGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAATTTAGAAGGACACATAAAGGCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCCAGCGATTATAAATGCATGGAATGTGAATATCAGACGAACATCAAGGCACATTTAAAAAGACACATAAAGTTAAAACATCTTAAATCATGCGATTTTAAATGCATGGAGTGTGAATATCAGACGAATTTCAAATCAGGTTTAGCAAAACACATAAAGGCAAAACATCTTAAATCAAGCGATTATAAATGCATGGAATGTGAATATCAGACGAACTTCAAGGCACGATTAGAAAGACACATAAAGTCAAAACATCTTAAATCATGTGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAAAACACATAAAGACAAAACATCTTAAATCAAGTGATTATAAATGCATGGAATGTGAATATCAGACGAACTTCAAGGCACAATTAGAAAGACACATAAAGTCAAAACATCTTAAATTATGTGATTATAAATGCATGGAGTGTGAATACCAGACGAACTTTAAGTCAAATTTAGAAAAACACATAAAGACAAAATATCATAAATCAAGTGCATGGAGTGTGAATACCAAACAAACTTCAAGATAG
- Protein Sequence
- MINSISFNFRHCVLPTQKVVEGEVERRSFVRSKVKGWKRGIYRCTQCKFKTMYNADFRHHTNEHYKVKMYKCGICNRRYKGKKSLKTHVEKTHINNEGRDTHKYSACNYSKANENAKQRSTHSHNGGKQCQGAKCKFQTRHKCHLKSPIKRKDSSRGKYKCANCGFKTYYRTYLERHIKINHLMVESNYKCMKCEFVTKFKSSLARHIKAKHLKLNKYKCMECEYQTIIKSNLKRHIKSKHLETSDYKCADCEYETNRKSNLEMHIKSKHLKSSDYKCVKCEYQTNFKSLLGKHIKTKHLKLRDYKCMECEFQTNFTSNLRKHVKAKHLKSRDYNCMECKYQTNFRMNLERHMKTKHLKLWDYKCMECEYQTNFKTCLKMHIKSKHLKTRDYKCMECEYQANRKSNLEIHIKTKHLKSSDYKCMECEYQTNIKTHLKRHIMSKHLKSSDFKCMECEYQTNFKSSLEGHIKAKHLKSSDYKCVECEYQTNSKSSLEKHIKAKHLKSNDYKCVECEYQTNFKSNLEGHIKAKHLKSSDYKCVECEYQTNFKSSLEIHIKSKHLKSSDYKCMECEYQTNIKAHLKRHIKLKHLKSCDFKCMECEYQTNFKSGLAKHIKAKHLKSSDYKCMECEYQTNFKARLERHIKSKHLKSCDYKCVECEYQTNFKSSLEKHIKTKHLKSSDYKCMECEYQTNFKAQLERHIKSKHLKLCDYKCMECEYQTNFKSNLEKHIKTKYHKSSAWSVNTKQTSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00990048;
- 90% Identity
- -
- 80% Identity
- -