Mmel068830.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000567.1:747221-750361[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.2 1.4e+02 6.6 0.4 5 23 2 21 1 21 0.92 2 23 0.0021 0.25 15.3 4.5 1 23 27 50 27 50 0.98 3 23 0.0058 0.67 13.9 2.3 1 23 56 79 56 79 0.98 4 23 0.0021 0.25 15.3 1.6 1 23 85 108 85 108 0.98 5 23 0.0016 0.19 15.7 2.5 1 23 114 137 114 137 0.98 6 23 0.0021 0.25 15.3 1.6 1 23 143 166 143 166 0.98 7 23 0.009 1 13.3 0.6 1 21 172 192 172 193 0.96 8 23 4.7 5.5e+02 4.8 0.4 5 23 193 212 192 212 0.94 9 23 0.0077 0.9 13.6 1.6 1 23 218 241 218 241 0.98 10 23 0.0021 0.25 15.3 4.5 1 23 247 270 247 270 0.98 11 23 0.0058 0.67 13.9 2.3 1 23 276 299 276 299 0.98 12 23 0.0021 0.25 15.3 1.6 1 23 305 328 305 328 0.98 13 23 0.0016 0.19 15.7 2.5 1 23 334 357 334 357 0.98 14 23 0.01 1.2 13.2 0.4 1 21 363 383 363 384 0.96 15 23 4.7 5.5e+02 4.8 0.4 5 23 384 403 383 403 0.94 16 23 0.0018 0.21 15.6 1.8 1 23 409 432 409 432 0.98 17 23 0.0069 0.8 13.7 3.6 1 23 438 461 438 461 0.98 18 23 0.0069 0.8 13.7 3.6 1 23 487 510 487 510 0.98 19 23 0.11 12 10.0 1.9 1 23 536 559 536 559 0.98 20 23 0.11 13 9.9 2.1 1 23 565 588 565 588 0.98 21 23 0.068 7.9 10.6 3.1 1 20 594 613 594 615 0.96 22 23 0.0018 0.21 15.6 1.8 1 23 630 653 630 653 0.98 23 23 0.0069 0.8 13.7 3.6 1 23 659 682 659 682 0.98
Sequence Information
- Coding Sequence
- ATGAAGTGTGAATATCAAGCGAATACGAAGTCATATTTGGAAAGACACGTAAAGAGAAAACATCTTAAATTACACGATTATAAATGCAAGGAGTGTGAATACCAGACGAACAACAAGACACATTTGAAAATACACATAAAGTCAAAACATCTTAACTTACACGATTATAAATGCAGGGAGTGTGAATACCAGACGAACTACAAGACAGATTTAGAAAAACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACAATAAGACAGATTTAGAAAAACACATAAAGTCAAAACATCTTAACTTACACGATTATAAATGCAAGGAGTGTGAATACCAGACGAACTACAAGACAGATTTAGAAAAACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACAATAAGACAGATTTAGAAAAACACATAAAGTCAAAACATCTTAACTTACACGATTATAAATGCAAGGAGTGTGAATACCAGACGAACTACAAGACAGCTTTAGAAAAACACATAAAGGAGTGTGAATACCAGACGAACAAAAAGTTTGATTTGGTGACACACATAAAGTCAAAACATCTTAAATTACACGAATATAAATGCATGGAGTGTGAATATCAAGCGAATACGAAGTCATATTTGGAAAGACACGTAAAGAGAAAACATCTTAAATTACACGATTATAAATGCAAGGAGTGTGAATACCAGACGAACAACAAGACACATTTGAAAATACACATAAAGTCAAAACATCTTAACTTACACGATTATAAATGCAGGGAGTGTGAATACCAGACGAACTACAAGACAGATTTAGAAAAACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACAATAAGACAGATTTAGAAAAACACATAAAGTCAAAACATCTTAACTTACACGATTATAAATGCAAGGAGTGTGAATACCAGACGAACTACAAGACAGATTTAGAAAAACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACAATAAGACAGATTTAGAAAAACACATAAAGGAGTGTGAATACCAGACGAACAAAAAGTTTGATTTGGTGACACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCAAGGAGTGTGAATACCAGACGAACTACAAGACAGCTTTAGAAAAACACATAAAGTCACAACATCTTAAATTATATGATTATAAATGCTTGGAGTGTGAATACCAGACGAACAACAAGACACATTTGAAAATACACATAAAGTCAAAACATCTTAACTTACACGATTATAAATGCAGGGAGTATTTAGAAAAACACATAAAGTCACAACATCTTAAATTATATGATTATAAATGCTTGGAGTGTGAATACCAGACGAACAACAAGACACATTTGAAAATACACATAAAGTCAAAACATCTTAACTTACACGATTATAAATGCAGGGAGTATTTAGAAAAACACATAACGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCTGACGAACAAAAAGTTTAATTTGGTGACACACATAAAGTCAAAACATCTTAAATTACACGAATATAAATGCATGAAGTGTGAATATCAAGCGAATACGAAGTCATATTGGGAAAGACACGTAAAGAGAAAACATCTTAAATTACACGATTATAAATGCAAGAAGTGTGAATACCAGACGAACAACAAGACACATTTGAAAATACACAAATTTGATTTGGTGACACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCAAGGAGTGTGAATACCAGACGAACTACAAGACAGCTTTAGAAAAACACATAAAGTCACAACATCTTAAATTATATGATTATAAATGCTTGGAGTGTGAATACCAGACGAACAACAAGACACATTTGAAAATACACATAAAGTCAAAACATCTTAACTTACACGATTATAAATGCAGGGAGTGTGAATAA
- Protein Sequence
- MKCEYQANTKSYLERHVKRKHLKLHDYKCKECEYQTNNKTHLKIHIKSKHLNLHDYKCRECEYQTNYKTDLEKHIKSKHLKLHDYKCMECEYQTNNKTDLEKHIKSKHLNLHDYKCKECEYQTNYKTDLEKHIKSKHLKLHDYKCMECEYQTNNKTDLEKHIKSKHLNLHDYKCKECEYQTNYKTALEKHIKECEYQTNKKFDLVTHIKSKHLKLHEYKCMECEYQANTKSYLERHVKRKHLKLHDYKCKECEYQTNNKTHLKIHIKSKHLNLHDYKCRECEYQTNYKTDLEKHIKSKHLKLHDYKCMECEYQTNNKTDLEKHIKSKHLNLHDYKCKECEYQTNYKTDLEKHIKSKHLKLHDYKCMECEYQTNNKTDLEKHIKECEYQTNKKFDLVTHIKSKHLKLHDYKCKECEYQTNYKTALEKHIKSQHLKLYDYKCLECEYQTNNKTHLKIHIKSKHLNLHDYKCREYLEKHIKSQHLKLYDYKCLECEYQTNNKTHLKIHIKSKHLNLHDYKCREYLEKHITSKHLKLHDYKCMECEYLTNKKFNLVTHIKSKHLKLHEYKCMKCEYQANTKSYWERHVKRKHLKLHDYKCKKCEYQTNNKTHLKIHKFDLVTHIKSKHLKLHDYKCKECEYQTNYKTALEKHIKSQHLKLYDYKCLECEYQTNNKTHLKIHIKSKHLNLHDYKCRECE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -