Mmel099078.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000918.1:743417-745054[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00054 0.063 17.2 0.6 1 23 19 42 19 42 0.97 2 17 0.0075 0.87 13.6 0.1 1 23 81 104 81 104 0.94 3 17 0.0081 0.94 13.5 3.1 1 23 110 133 110 133 0.97 4 17 1.3 1.5e+02 6.6 1.7 1 23 139 162 139 162 0.95 5 17 0.078 9.1 10.4 3.0 1 23 168 191 168 191 0.96 6 17 0.085 10 10.3 1.9 1 23 197 220 197 220 0.96 7 17 0.0068 0.79 13.7 1.8 1 23 226 249 226 249 0.95 8 17 0.13 16 9.7 5.0 1 23 255 278 255 278 0.96 9 17 0.001 0.12 16.3 0.6 1 23 284 307 284 307 0.96 10 17 0.022 2.6 12.1 2.1 1 23 313 336 313 336 0.94 11 17 0.0005 0.058 17.3 0.3 1 23 342 365 342 365 0.94 12 17 0.00067 0.078 16.9 1.6 1 23 371 394 371 394 0.94 13 17 0.00018 0.021 18.7 0.7 1 23 400 423 400 423 0.96 14 17 0.0029 0.34 14.9 0.6 1 23 431 454 431 454 0.95 15 17 0.00052 0.06 17.3 0.4 1 23 460 483 460 483 0.96 16 17 0.017 2 12.5 0.9 1 23 489 512 489 512 0.96 17 17 0.00056 0.065 17.1 1.3 1 23 518 541 518 541 0.96
Sequence Information
- Coding Sequence
- ATGTACAACGCCGACTTGAGGCAGCACTCTAACAAGCATTTTGAAGTGAAGAGGTACAAATGTGGAATTTGTCAGAGAAGATACAAGGCGAAGGAATCTCTCAATGCACACTTGATAAAAAATCATGTTAAAAATGAAGAAAAAGGTGTCCAAAAATACATTGCGTGTGACTATTTCAAAGTAAATATTAAAAATATAAAGGAGAGATCTCCACGCGCAAAATATCCTAAAGTTAGGAATTATAAGTGCGTGGAGTGTGATTACAAGACAAACCTGAAGTCGAATTTGCAAGGGCACATAGCGGCAGTTCATCTGAAACAAAGGGATTATAAATGCACAGAGTGTGAATTCACGGCATTTCGCAAGTCACACTTAGGAAAGCACATAAAAATAAAACATCTGAAACAAGATTATTATAAATGCATGGCGTGTGAATTCAAGACATACCTCAAGGAATATTTGAGAAGACACATAAAAGCAAAACATCTGAAGCAAGACGATTATAAATGCGTGGAGTGTGAATACAAGACACACATGAAGTCATATCTAACAAATCACATAAAAGCTAAACATCTGAAACAAGATGATTATAAATGCACAGAATGTGAATACAAGACTTATAAAAAGACGCGTTTAGAAATGCACATAAAAGCAACACATTTGAACGAATATGATTATATATGCACAGAGTGTGAGTTCAAGACAAACAACAAGTCAAATTTTCAGACACACGTGAAAGCTAAGCATCGTAAAGGAGATGATTATAAATGCATGGAGTGTGAATACAAGACAAACTACAAGTCATGTTTCGAAAAACACATAAAAGGAAAACATCTTAATGAAAAAGATTATAAATGCGTTGAGTGTGAATACAAGACAAACTACAAGTCACAATTACAAATCCATATTAAAGCAATACATCTTGAAAAAAAGGATTATAACTGCACAGAGTGTGATTTTAAGACAAACTACAGGTCAAGTTTAAAAATACACAAAAACGCTAAACATCTTAAAAAAAATGATTATAAATGTACAGAGTGTGAATACAAGACAAACCAGAAATCGAATTTGCAAGGACACATAGCAGCAATACATCTGAAACATAAGAATTATAAGTGCACAGAGTGCGAACACAAGACAAATTATAAATCAGATTTAAAAAGGCACATAGCAGCAATACATCTGAAGCAAAGGAATTATAAATGCACAGAGTGTGAATTTATGGCGTCTCGCAAGTCGAACTTAGAAAATCACATAAAGGCAAAACATCTGAAAGAAAGACAGAGGGATTATAAATGCGCAGATTGTGAATTCATGGCGTTTCGCAAGTCAAACTTAGAAAATCACATAAAAGCAAAACATCTGAAACAAAATGATTATAAATGCGCAGAGTGTGAATTTATGGCGTCTCGCAAGTCAAACTTAGAAAATCACATAAAAGCAAAACATCTTAATGAAAATGAGTATAAATGTATGGAGTGTGAATTCAAGACAAACTACAAGGCAAGTTTACAAGTACACATAAAAGCAAAACATCGCAATGAAAATGAGTATAAATGCATGGAGTGTGAATACAAGACAAATTACAAGTCAAACTTAACAGCACACATAAAAGCAAAACATAATAAAATATTATAA
- Protein Sequence
- MYNADLRQHSNKHFEVKRYKCGICQRRYKAKESLNAHLIKNHVKNEEKGVQKYIACDYFKVNIKNIKERSPRAKYPKVRNYKCVECDYKTNLKSNLQGHIAAVHLKQRDYKCTECEFTAFRKSHLGKHIKIKHLKQDYYKCMACEFKTYLKEYLRRHIKAKHLKQDDYKCVECEYKTHMKSYLTNHIKAKHLKQDDYKCTECEYKTYKKTRLEMHIKATHLNEYDYICTECEFKTNNKSNFQTHVKAKHRKGDDYKCMECEYKTNYKSCFEKHIKGKHLNEKDYKCVECEYKTNYKSQLQIHIKAIHLEKKDYNCTECDFKTNYRSSLKIHKNAKHLKKNDYKCTECEYKTNQKSNLQGHIAAIHLKHKNYKCTECEHKTNYKSDLKRHIAAIHLKQRNYKCTECEFMASRKSNLENHIKAKHLKERQRDYKCADCEFMAFRKSNLENHIKAKHLKQNDYKCAECEFMASRKSNLENHIKAKHLNENEYKCMECEFKTNYKASLQVHIKAKHRNENEYKCMECEYKTNYKSNLTAHIKAKHNKIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -