Mmel015331.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000125.1:474139-478585[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.025 2.9 12.0 2.1 2 23 33 55 33 55 0.95 2 18 0.0013 0.16 15.9 1.2 1 23 61 84 61 84 0.96 3 18 0.014 1.6 12.8 2.5 1 23 90 113 90 113 0.96 4 18 0.00079 0.092 16.7 0.9 1 23 118 141 118 141 0.97 5 18 0.0031 0.36 14.8 0.5 1 23 146 169 146 169 0.95 6 18 0.00055 0.064 17.2 0.8 1 23 174 197 174 197 0.96 7 18 0.036 4.2 11.4 3.1 1 23 202 225 202 225 0.95 8 18 0.0071 0.82 13.7 2.7 1 23 230 253 230 253 0.95 9 18 0.0054 0.63 14.0 1.9 1 23 259 282 259 282 0.96 10 18 0.0033 0.38 14.7 2.2 1 23 288 311 288 311 0.96 11 18 0.0096 1.1 13.3 1.0 1 23 317 340 317 340 0.96 12 18 0.0055 0.65 14.0 0.9 1 23 345 368 345 368 0.95 13 18 0.17 19 9.4 4.5 1 23 374 397 374 397 0.96 14 18 0.00048 0.056 17.3 1.8 1 23 402 425 402 425 0.98 15 18 0.16 19 9.4 2.7 1 23 430 453 430 453 0.96 16 18 0.0031 0.36 14.8 1.7 1 23 459 482 459 482 0.96 17 18 0.014 1.6 12.7 0.9 1 23 487 510 487 510 0.95 18 18 0.0058 0.67 13.9 2.8 1 23 516 539 516 539 0.96
Sequence Information
- Coding Sequence
- ATGTTAACTATATATACAGAAAGTATAGAAATGAAAAGCAATGTCCGTCTTCGAGGAATGCCGTGCATTGAAAAGTTCCAACTAGAACGAAACGCGTCTTGCACAGAGTGTGAATTCAAGACAAACTATAAGGGACATTTAAAAGTACACATAAGAGCAAAACATCTTGAAGAAGATGATTATAAATGCGCAGAGTGCGAATTCAAGACAAAATACAGGTCAAATTTACAAATACACATAAAAGCAAAGCATCTTAAAGAAAATAATTATAAATGCACAGAGTGTGAATTCAAGACAAACTACAAGGTCAATTTACAAACACACACAAAAGCAAAACATCTTAAAGGAGATTATAATTGTCCAGAGTGTGAGTACAAGACAAGCTACAAGGCGAATTTACAATTACACACGAAAGTAAAGCATGTTAATGGAGATTATAATTGCACAGAATGTGAATACAAGGCAAGCAGCAAGGCCAATTTACAAGCACACACAAAAGCAAAGCATCTTATAGAAGATTATAATTGTACAGAATGTGAATACAACACAAGCTACAAGGCCAATTTACAAGTACACATGAAAGCAAAGCATCTTAAAGAATATTATAATTGCACAGAATGTGAATACAAGACAAAGTACAAGGCCAATTTACATGTACACACAAAAGCGAAGCATCTTAAAGCAGATTATAATTGCCCAGAGTGTGAATACAAGACAAGCTACAAATTTCATTTAAAGGAACACCTAAATGCGAAACATCTGAATCGGAAGGATTACAAATGCGCAGGGTGTGAATTCACGACAAACTACAAGTCATATTTAAAAAAACACGTGAAAGCAAAACATCTAGAAGATGGTGATTATAAATGCACAGAGTGTGAATTCAAGACAAAGTACAAGTCAGGTTTACAAAAACACACAATAGTAAAGCATCTTAAAGAAAATAATTATAAATGCGCAGAGTGCGAGTACAAGACAAACTTCAAGGCCAATTTACAAGTACACACAAAAGCAAAACATCTTAAAGAAGATTATAATTGTCCAGAGTGTGAATTCAAGACAAGCTACAGATACAATTTACAATTACACACAATAGTGAAGCATCTTAAAGAAAATAATTATAAATGCACAGAGTGTGAATACAAGACAAGCTGCAAGGCCAATTTACAAAAACACACAAAAGCAAAGCATCTTAAAGAAAATTATAATTGTACAGAATGTGAATACAAGACAAGCTACAAAGGCAATTTACAAGCACACACAAAAACAAAGCATCTTAAAGAAGATTATAACTGCACAGAATGTGAATACAAGACAAGCTGCAAGGTCAATTTACAAATACACATGAAAGCAAAGCATCTTCAAGAAAATTATTATAAATGCACAGGATGTGAATTCAAGACAAGCTACAAGTCCAATTTACTAGTGCACACAAAAGCGAAGCATCTTAAAGCAGATTATAATTGCCCAGAGTGTGAATACAAGGCAAACTATAAATTTAATTTAAAGGAACACCTAAAAGCGAAACATCCGAATCGGAAGGATTATAAATGCGCAAGGTGTGAATTCACGACAAACTACAGGTCAAATTTAAAAAAACACTTAAAAGCAAAACATCTTAATGCAAATGATTATAAATGCACAGTGTGA
- Protein Sequence
- MLTIYTESIEMKSNVRLRGMPCIEKFQLERNASCTECEFKTNYKGHLKVHIRAKHLEEDDYKCAECEFKTKYRSNLQIHIKAKHLKENNYKCTECEFKTNYKVNLQTHTKAKHLKGDYNCPECEYKTSYKANLQLHTKVKHVNGDYNCTECEYKASSKANLQAHTKAKHLIEDYNCTECEYNTSYKANLQVHMKAKHLKEYYNCTECEYKTKYKANLHVHTKAKHLKADYNCPECEYKTSYKFHLKEHLNAKHLNRKDYKCAGCEFTTNYKSYLKKHVKAKHLEDGDYKCTECEFKTKYKSGLQKHTIVKHLKENNYKCAECEYKTNFKANLQVHTKAKHLKEDYNCPECEFKTSYRYNLQLHTIVKHLKENNYKCTECEYKTSCKANLQKHTKAKHLKENYNCTECEYKTSYKGNLQAHTKTKHLKEDYNCTECEYKTSCKVNLQIHMKAKHLQENYYKCTGCEFKTSYKSNLLVHTKAKHLKADYNCPECEYKANYKFNLKEHLKAKHPNRKDYKCARCEFTTNYRSNLKKHLKAKHLNANDYKCTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -