Mmel015533.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000125.1:1378680-1380077[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00085 0.099 16.6 3.7 1 23 19 42 19 42 0.98 2 15 0.00083 0.097 16.6 0.6 1 23 48 71 48 71 0.98 3 15 0.013 1.5 12.9 1.0 1 23 77 100 77 100 0.96 4 15 0.018 2 12.4 1.6 1 23 106 129 106 129 0.98 5 15 0.0013 0.15 16.0 2.4 1 23 135 158 135 158 0.96 6 15 6e-05 0.007 20.2 1.5 1 23 164 187 164 187 0.96 7 15 0.0023 0.27 15.2 3.6 1 23 193 216 193 216 0.96 8 15 4.7e-05 0.0055 20.5 2.4 1 23 222 245 222 245 0.98 9 15 0.00028 0.033 18.1 1.7 1 23 251 274 251 274 0.96 10 15 0.00018 0.021 18.7 1.9 1 23 280 303 280 303 0.96 11 15 0.86 1e+02 7.1 0.6 1 23 308 331 308 331 0.96 12 15 7.1e-05 0.0083 20.0 1.6 1 23 337 360 337 360 0.96 13 15 0.006 0.7 13.9 1.2 1 23 366 389 366 389 0.98 14 15 0.00016 0.019 18.8 3.9 1 23 395 418 395 418 0.98 15 15 0.00016 0.019 18.8 1.6 1 23 424 447 424 447 0.96
Sequence Information
- Coding Sequence
- ATGTACAACGCCGACTTTAGGCACCACACTAACGAGCATTGCCAGGTGAAAAAATACAAGTGTGAAATTTGTCATATGAGATACAAGGCGAAGAAATCTCTCAACGTGCACTTAAAAACGAAACATCTTGGAGAAAGAAATTATAAATGTGTAGGGTGTGAATACAAGACAAACTACAAGGCAAATTTACAAATACACATAAAAGTAAAGCATCTTAGAGAAAATGATTATAAATGCGGAGAGTGTGAATTCAAGACAAGCATCAAGTCATATTTAAAAGAACATATAAAAGCAAAGCATCTTAAAGAAAATGATTACAAATGCACAGAGTGTGAATTCGAGACAAGCATCAAGGCATATTTAAAAAAACACGTAAAATCAAAGCATCTTAAAGAAAATGATTATAAATGCTCAGAGTGTGAATACGAGACAAACTACAAGTCACATTTAAAAGATCACATAAATGCAAAGCATCTGAAACAAAATAATTATAAATGTACAGAGTGTGAATACAGGACAAGCTACAAGTCAAATTTACAAGTGCACATAAAAGCAAAGCATCTTAAAGAAAATGATTATAAATGCACAGAGTGTGAATACAAGACAAGTTACAAGACACATTTAAAAGATCACATAAATGCAAAGCATCTTAAAGAAATCGATTATAAATGCACAGAGTGTGAATACAAGACCAACTACAAGTCAAATTTACAAGTGCACATAAAAACAAAGCATTTTAAAGAAAATGATTATAAATGCACCGAGTGTGAATATAAGACAAGCTACAAGTCACAGTTAAAAGATCATATAAATGCAAAGCATCTTAAAGAAATTGATTATAAATGCACAGAGTGTGAATACAAGACAAACTACAAGTCAAATTTAAAAGTACACATAAAAGCAAAGCATTTTAAAGATAATTATAAATGCGCAGAGTGTGAATTCGAGACAAACTGCAAGGCAAGTTTACAAGCACACATAGAAGTAAGGCATCTTAAAGAGAATGATTATAAATGTACAGAGTGTGAATACAAGACAAGCTACAAGTCAAATTTACAGGTACACATAAAAGCAAAGCATCTTAAAGAAAATTATTATAAATGCACAGCGTGTGAATACAAGACCAACTACAAGGCAAGTTTACAAGCGCACATAAAATCTAAGCATCTTAAAGAAGATGATTATAAATGCACATACTGTGAATACAAGACCAACTACAAGTCAAATTTACAAACACACATAAAATCTAAGCATCTTAAAGAAAATGATTATAAATGCACAGAGTGTGAATACAAGACAAACTACAAGTCAAATTTACAAGTGCACATAAAAGCAAAGCATCTTAAAGAAAAACATAAAAGCGTGAATACAAGACAAACTACAAGTCAAATTTCGTAG
- Protein Sequence
- MYNADFRHHTNEHCQVKKYKCEICHMRYKAKKSLNVHLKTKHLGERNYKCVGCEYKTNYKANLQIHIKVKHLRENDYKCGECEFKTSIKSYLKEHIKAKHLKENDYKCTECEFETSIKAYLKKHVKSKHLKENDYKCSECEYETNYKSHLKDHINAKHLKQNNYKCTECEYRTSYKSNLQVHIKAKHLKENDYKCTECEYKTSYKTHLKDHINAKHLKEIDYKCTECEYKTNYKSNLQVHIKTKHFKENDYKCTECEYKTSYKSQLKDHINAKHLKEIDYKCTECEYKTNYKSNLKVHIKAKHFKDNYKCAECEFETNCKASLQAHIEVRHLKENDYKCTECEYKTSYKSNLQVHIKAKHLKENYYKCTACEYKTNYKASLQAHIKSKHLKEDDYKCTYCEYKTNYKSNLQTHIKSKHLKENDYKCTECEYKTNYKSNLQVHIKAKHLKEKHKSVNTRQTTSQIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -