Mmel056508.2
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000473.1:928546-931104[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 3.1 3.6e+02 5.3 5.5 1 23 5 27 5 27 0.98 2 26 0.071 8.3 10.5 3.4 1 23 33 56 33 56 0.96 3 26 0.014 1.6 12.8 3.3 1 23 113 136 113 136 0.97 4 26 0.01 1.2 13.2 2.0 1 23 142 165 142 165 0.96 5 26 0.00028 0.032 18.1 1.5 1 23 171 194 171 194 0.98 6 26 0.015 1.7 12.7 1.7 1 23 200 223 200 223 0.97 7 26 0.0002 0.023 18.5 2.2 1 23 229 252 229 252 0.98 8 26 2.7 3.2e+02 5.5 5.0 1 23 258 281 258 281 0.97 9 26 0.074 8.7 10.5 1.2 1 23 287 310 287 310 0.98 10 26 0.34 40 8.4 3.3 1 23 316 339 316 339 0.98 11 26 0.00087 0.1 16.5 1.6 1 23 345 368 345 368 0.98 12 26 0.34 40 8.4 3.3 1 23 374 397 374 397 0.98 13 26 0.00051 0.059 17.3 1.5 1 23 403 426 403 426 0.98 14 26 0.79 92 7.2 2.3 1 23 432 455 432 455 0.98 15 26 0.0026 0.31 15.0 0.7 1 23 461 484 461 484 0.96 16 26 2.7 3.1e+02 5.6 0.7 1 23 491 514 491 514 0.95 17 26 0.002 0.23 15.4 1.8 1 23 520 543 520 543 0.98 18 26 0.081 9.5 10.3 1.6 1 23 578 601 578 601 0.98 19 26 0.28 33 8.6 1.3 1 23 607 630 607 630 0.96 20 26 2.2e-05 0.0025 21.6 2.8 1 23 636 659 636 659 0.98 21 26 0.049 5.6 11.0 2.9 1 23 665 688 665 688 0.98 22 26 9.6e-05 0.011 19.5 2.3 1 23 694 717 694 717 0.98 23 26 0.049 5.6 11.0 2.9 1 23 723 746 723 746 0.98 24 26 0.0014 0.16 15.9 1.4 1 23 752 775 752 775 0.98 25 26 0.00039 0.045 17.7 2.0 1 23 781 804 781 804 0.98 26 26 1.3 1.5e+02 6.5 0.8 1 23 810 833 810 833 0.96
Sequence Information
- Coding Sequence
- ATGCGTGGAATATACAAATGTACGCAATGCAAGTTCAAAACAATGTACAACGCCGACTTCAGGCACCACACTAACGAGCATTACACGGTGAAAATATTCAAATGTGGAATTTGTGGCCTAAGATGTAAGGGGAAGAAATTTCTCAAGACACATGTGGAAAAATTTCATATTAACAATGAGAGAAGAGATATTCAAAAATTTTCTGCACGTGACTCCTCCAAACCTAATAAAAATACAAAACAGAGATCTACACATTACAAACAATGTCAATGGACGAAATGCAAGTTTCAAACGAGGCACCAACGTCACTTAAAAATAAATTTAAACAGAGAAAAATATAAGTGCGCATATTGCCAGTTTAAGACATATTACAGAACTTACTTAGAAAGGCACATGAAAATAAACCATCTCATGGAAAGTAATTATAAATGCGCGGAGTGTAAATTCGAAACAAAGCACAAGGCAAGTTTAGTAAGACACATAAAGGCAAAACATTTGAAATTGAGGGATTATAAATGCAAGGAGTGTGAATATCAAGCGAATAGGAAGTCAAATTTGGAAATGCACATAAAGACAAAACATCTTAAATTACACGATTACAAGTGCATGGAGTGTGAATATCAAACGAATAGGAAGTCAGATTTCGAAATGCACATAAAGTTAAAACATCTTAAACTACACGATTATAAATGCAAGGAGTGTGAATATCAAACGAATAGGAAGTCAAATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACGCGATCATAAATGCATGGAGTGTGAATACCAGACGCACTCGAAATTAAATTTGAATATGCACATAAAGTCAAAACATCTTAAATCATGGGTTTATAAATGCATGGAGTGTGAATACCAGACGAACATCAAGACAGATTTAGCAAAACACATAAAGAGAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGCACTCGAAATTAAATTTGAATATGCACATAAAGTCAAAACATCTTAAACTACACGATTATAAATGCATGGAGTGTGAATATCAAACGAATAGGAAGTCAAATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACGCGATTATAAATGCATGGAGTGTGAATACCAGACGCACTCGAAATTAAATTTGAATATGCACATAAAGTCAAAACATCTTAAACTACACGATTATAAATGCAAGGAGTGTGAATATCAAACGAATAGGAAGCCAAATTTGGAAATGCACATAAAGACAAAACATCTTAAATTACGCGATTATAAATGCATGGAGTGTGAATACCAGACGAACATCAAGGCATGTTTGGAAACACACATAAAGTCAAAACATCTTAAATTACGCGATTATAAATGCATGGAGTGTGAATATCAAACGAATGGGAAGTCAAATTTGGAAAGACACATAAAAGCAAAACATCTTAAATCAACAAGCGATTATAAATGCATGGAGTGTGAATACCAGACGAGCTGGATGCCAAGTTTAAAAAGGCACATAAAGTTAAAACATCTTAAACTACACGATTTTAAATGCAAGGAGTGTCAATATCAAACGAATGGGAAGTCAAATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACGCGATTATAAATGCATGGAGTGTGAATACCAGACGAGCTGGATGCCATGTTTAAAAAGGCACATAAAGTCAAAACATCTTAAATTACGCGATTATAAATGCATGGAGTGTGAATATCAAACGAATAGGAAGTTATATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACACGATTACAAGTGCATCGAGTGTGAATATCAAACGAATAGGAAGTCAGATTTCGAAATGCACATAAAGTTAAAACATCTTAAACTGCACGATTATAAATGCAAGGAGTGTGAATATCAAACGAATAGGAAGTCAAATTTGGAAAGGCACATAAAGACAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACAACAAGGCATGTTTGGAAACACACATAAAGTCAAAACATATTAAATTACGCGATTATAAATGCAAGGAGTGTGAATATCAAACGAATAGGAAGTCAAATTTGGAAATGCACATAAAGACAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACAACAAGGCATGTTTGGAAACACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATATCAAACGAATAGCAAGTCAAATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACGCGATTATAAATGCAAGGAGTGTGCATATCAAACGAATAGGAAGTCAAATTTGGAAATGCACATAAAGACAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACTGGTTGCCAAGTTTAAAAAGGCACATAAAGTCAAAACATCTTAAATTACGCGATTACAAGTGCATGGAGTGTGAATACCAGACGAACAAAAAGGCATGA
- Protein Sequence
- MRGIYKCTQCKFKTMYNADFRHHTNEHYTVKIFKCGICGLRCKGKKFLKTHVEKFHINNERRDIQKFSARDSSKPNKNTKQRSTHYKQCQWTKCKFQTRHQRHLKINLNREKYKCAYCQFKTYYRTYLERHMKINHLMESNYKCAECKFETKHKASLVRHIKAKHLKLRDYKCKECEYQANRKSNLEMHIKTKHLKLHDYKCMECEYQTNRKSDFEMHIKLKHLKLHDYKCKECEYQTNRKSNLEMHIKSKHLKLRDHKCMECEYQTHSKLNLNMHIKSKHLKSWVYKCMECEYQTNIKTDLAKHIKRKHLKLHDYKCMECEYQTHSKLNLNMHIKSKHLKLHDYKCMECEYQTNRKSNLEMHIKSKHLKLRDYKCMECEYQTHSKLNLNMHIKSKHLKLHDYKCKECEYQTNRKPNLEMHIKTKHLKLRDYKCMECEYQTNIKACLETHIKSKHLKLRDYKCMECEYQTNGKSNLERHIKAKHLKSTSDYKCMECEYQTSWMPSLKRHIKLKHLKLHDFKCKECQYQTNGKSNLEMHIKSKHLKLRDYKCMECEYQTSWMPCLKRHIKSKHLKLRDYKCMECEYQTNRKLYLEMHIKSKHLKLHDYKCIECEYQTNRKSDFEMHIKLKHLKLHDYKCKECEYQTNRKSNLERHIKTKHLKLHDYKCMECEYQTNNKACLETHIKSKHIKLRDYKCKECEYQTNRKSNLEMHIKTKHLKLHDYKCMECEYQTNNKACLETHIKSKHLKLHDYKCMECEYQTNSKSNLEMHIKSKHLKLRDYKCKECAYQTNRKSNLEMHIKTKHLKLHDYKCMECEYQTNWLPSLKRHIKSKHLKLRDYKCMECEYQTNKKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -