Mmel065329.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melolontha melolontha
Gene Symbol
-
Assembly
GCA_935421255.1
Location
CAKXYX010000542.1:412190-413779[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00087 0.1 16.5 1.2 1 23 2 25 2 25 0.96
2 16 0.049 5.7 11.0 5.1 1 23 92 115 92 115 0.98
3 16 0.0067 0.78 13.8 0.3 1 23 121 144 121 144 0.96
4 16 0.00063 0.073 17.0 0.3 1 23 150 173 150 173 0.98
5 16 0.24 28 8.9 4.6 1 23 179 202 179 202 0.98
6 16 0.00029 0.034 18.0 0.5 1 23 208 231 208 231 0.98
7 16 0.0001 0.012 19.4 1.4 1 23 237 260 237 260 0.98
8 16 0.0011 0.13 16.2 1.7 1 23 266 289 266 289 0.95
9 16 0.0005 0.058 17.3 2.2 1 23 295 318 295 318 0.98
10 16 0.041 4.7 11.3 0.9 1 23 324 347 324 347 0.97
11 16 0.00041 0.048 17.6 3.6 1 23 353 376 353 376 0.98
12 16 0.0018 0.21 15.5 3.0 1 23 382 405 382 405 0.98
13 16 0.0001 0.012 19.5 2.6 1 23 411 434 411 434 0.98
14 16 0.0005 0.058 17.3 2.2 1 23 440 463 440 463 0.98
15 16 0.00068 0.079 16.9 2.8 1 23 469 492 469 492 0.98
16 16 1.6e-05 0.0019 22.0 1.4 1 23 498 521 498 521 0.98

Sequence Information

Coding Sequence
ATGTACAAATGTAGAATTTGTAACAGAAGATACAAGGCGAAGGAATCTCTCAAGGCACACGTCGAAAAAAATCACGCTGATAATGAAGGAAGAAATATCGAAAAATACTCTATGTGTGGCTATTTAAAAGCTAATATTAAAAATATAAAAGAAAGGTGCACACACTCACATGACAGTGGAAAACATTGTCAATGCTCAAAATGCAAGCTTCAGACAGGAGACAAGTGTTACCGAAAAACACTTATAAAAATAAAACATCTCCAGAGAGCCAAATATAAGTGCTCAAATTGCGAGTTTAAGACATATTACAGGACTTATTTAAAAATGCATATGAAAACGAAACATCTCATGGAATGTAATTACAAATGCATGGAGTGTGAATTCGAGACAAACGCCAAGTCAAGTTTAGAAAGACACATGAAAGCAATACATCTAAAACAAAAGGATTACAAATGTATGGAGTGCGAATACGAGGCAAATCGCAAGTCAGGGTTAGAAAAACACATAAAAACAATACATCTTAACGTAAGCGACTATAAATGCGTAGAGTGCGAATGCAAGACAAACCACAAGTCTCTTATAAAGAATCACGTAAAAACAATACATCTTAAAATACACGATTATAAATGCACGGAGTGTGAATACAGTGCAAACCGCAAGTCACGCCTAGAAGTACACATAAAGACAGTACATCTTAAAGTAGCCGATTATAAATGCACAGAGTGTGAATACAAGACAAACAACAAGTCACTTTTAGAAACACACCTGAAGACAATACATCTTAAAATACGCGATTATAAATGCACAGAGTGTGAATACAAGACGAACTACAAGTCTGATTTAGAAAAACATAAAAAGGCAATACATCTTAAAATACGCGATTATAAATGTACAGAGTGTGAATACAAGACGAACTACAAATCTGATTTAGCAAAACACAAAAAGACAATACATCTTAAAATACACGATTATAATTGCGCAGAGTGTGAATATAAGACAAACTACAAGTTTGTTTTAGAAAGACACCTGAAGACAATACATCTTAAAATACACGATTATAAATGCGCAGAGTGTGAATACAAGACGAACCACAAGTCTAATTTAGAAAAACACAAAAAGACAATACATCTTAAAGTAACCGATTACAAATGCGCAGAATGTGAATTCAAGACAAACTACAAGTCACATTTAGAAACACACCTGAAGACAGTACATCTTAAAATACGCGATTATAAATGCACAGAGTGTGACTACAAAACGAACTACAAGTCTGATTTAGAAAAACATAAAAAGACAATACATCTTAAAATACGCGATTATAAATGTACAGAGTGTGAATACAAGACGAACTACAAATCTGATTTAGCAAAACACAAAAAGACAATACATCTTAAAATACTCGATTATAATTGCGCAGAGTGTGAATACAAGACAAACCACAAGTCTAATTTCGAAAAACACATAAAGACAGTACATCTTAAAGTAACCGATTATAAATGCGCAGAGTGTGAATACAAGACAAACTACAAGTCAAATTTAGAAAGACACATGAAGACAATACATCCTACAGAAAGCGATTATACCGAGTAG
Protein Sequence
MYKCRICNRRYKAKESLKAHVEKNHADNEGRNIEKYSMCGYLKANIKNIKERCTHSHDSGKHCQCSKCKLQTGDKCYRKTLIKIKHLQRAKYKCSNCEFKTYYRTYLKMHMKTKHLMECNYKCMECEFETNAKSSLERHMKAIHLKQKDYKCMECEYEANRKSGLEKHIKTIHLNVSDYKCVECECKTNHKSLIKNHVKTIHLKIHDYKCTECEYSANRKSRLEVHIKTVHLKVADYKCTECEYKTNNKSLLETHLKTIHLKIRDYKCTECEYKTNYKSDLEKHKKAIHLKIRDYKCTECEYKTNYKSDLAKHKKTIHLKIHDYNCAECEYKTNYKFVLERHLKTIHLKIHDYKCAECEYKTNHKSNLEKHKKTIHLKVTDYKCAECEFKTNYKSHLETHLKTVHLKIRDYKCTECDYKTNYKSDLEKHKKTIHLKIRDYKCTECEYKTNYKSDLAKHKKTIHLKILDYNCAECEYKTNHKSNFEKHIKTVHLKVTDYKCAECEYKTNYKSNLERHMKTIHPTESDYTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00990206;
90% Identity
-
80% Identity
-