Mmel165742.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010002164.1:79224-81413[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.4 1.7e+02 6.4 0.0 5 20 23 38 21 40 0.91 2 23 0.018 2.1 12.4 4.2 1 23 96 119 96 119 0.98 3 23 0.00032 0.038 17.9 2.2 1 23 125 148 125 148 0.98 4 23 0.024 2.9 12.0 3.2 1 23 154 177 154 177 0.98 5 23 0.00085 0.099 16.6 1.5 1 23 183 206 183 206 0.98 6 23 0.036 4.2 11.5 2.0 1 23 212 235 212 235 0.98 7 23 0.015 1.7 12.7 2.9 1 23 241 264 241 264 0.98 8 23 0.0077 0.9 13.6 2.4 1 23 270 293 270 293 0.98 9 23 0.036 4.2 11.5 2.0 1 23 299 322 299 322 0.98 10 23 0.015 1.7 12.7 2.9 1 23 328 351 328 351 0.98 11 23 0.00082 0.096 16.6 2.4 1 23 357 380 357 380 0.98 12 23 0.021 2.5 12.2 3.0 1 23 386 409 386 409 0.98 13 23 0.038 4.4 11.4 3.9 1 23 415 438 415 438 0.98 14 23 0.0023 0.27 15.2 1.5 1 23 444 467 444 467 0.98 15 23 0.036 4.2 11.5 2.0 1 23 473 496 473 496 0.98 16 23 0.076 8.9 10.4 2.5 1 23 502 525 502 525 0.98 17 23 0.00057 0.067 17.1 2.3 1 23 531 554 531 554 0.98 18 23 0.036 4.2 11.5 2.0 1 23 560 583 560 583 0.98 19 23 0.02 2.4 12.2 2.8 1 23 589 612 589 612 0.98 20 23 0.02 2.3 12.2 2.4 1 23 618 641 618 641 0.98 21 23 5.5e-05 0.0064 20.3 1.7 1 23 647 670 647 670 0.98 22 23 0.00075 0.087 16.7 1.2 1 23 676 699 676 699 0.98 23 23 0.001 0.12 16.3 1.6 1 23 705 728 705 728 0.98
Sequence Information
- Coding Sequence
- ATGTACAACGCCGACTTCAGGCACCACACTAACGAGCATTACAAGATAAAAATGTACAAATCTGGAATTTGTAACCGAAGATACAAGGGGAAGGAATCTCTCAATACGCACGTGGAAAAAATTATTATTGTTGTCAATGAAGGAAGAAATATCCAAAAATACTCAGCGTGTGACTATTCCAACGATGGTGAACAAAAATGCCAATGCACGAAATGCAAGTTTAAAAAAAGGCACAATTGTCACTTGAAATCACTTATAGAAGTGAAGCACTTGAACAGGGGTAAATATAAGTGCAAAAATTGCGAGTTTATGACATATTACAGGACTTATTTGGAAAAGCACATGAAAATGAAACACCTCATGGAATGCAATTATAAATGTGCAAAGTGTGAATACCAGACGAAGTCCAAGTCAACTTTAGAAAGACACATAAATACAAAACATCTTAAATTAAGCGATTATAAATGCATGGAATGTGAATATCAGACGAACTTCAAGACAAATTTGAAAACGCACGTAAAGACAAAGCATCTTAAATCAAGTGATTATAAATGCTTGGAGTGTGAATATCAGACGAACTTAAAGTCAAATTTAGAAAGACACATAAAGACAAAACATCTTAAATCAAGCGATTATAAATGCTTGGAGTGCGAATATCAAACAAATTATAAATCACGTTTACAAGAGCACATAAAGTCAAAACATCTTAAAGAATATGATTATAAATGCGCAGAGTGTGAATACCATACGAACGTCAAGAACAATTTTGAAAAGCACATAAATACAAAACATCTTAAAACAAGTGATTATAAATGCATGGAGTGTGAATACCAGACGAACTTCAAGTCAAGTTTAGAAAAACACGTAAAGACAAAACATCTTAAATCAAGCGATTATAAATGCTTGGAGTGCGAATATCAAACAAATTATAAATCACGTTTACAAGAGCACATAAAGTCGAAACATCTTAAAGAATACGATTATAAATGCGCAGAGTGTGAATACCATACGAACGTCAAGAACAATTTTGAAAAGCACATAAATACAAAACATCTTAAATTAAGCGATTATAAATGCATGGAATGTGAATATCAAACGAACTTCAAGTCAAATTTAGAGAAACACATAAAGACAAAACATCTTAAATCAAGGGATTATAAATGCTTGGAGTGTGAATATCAGACGAACTTCAAGAGAGATTTAGAAAGGCACAGAAAGACAAAACATCTTAAATCAAGTGATTATAAATGCATGGAGTGTGAATACCAAACGAACTTCAAGTCTAGTTTAGAACATCACGTAAAGACAAAACATCTTAAATTGAGCGATTATAAATGCTTGGAGTGTGAATACCAGACGAACTTCAAGTCAAGTTTAGAAAGACACATAAAGATTAAACATCTTAAATCAAGCGATTATAAATGCTTGGAGTGCGAATATCAAACAAATTATAAATCACGTTTACAAGAGCACATAAAGTCAAAACATCTTAAAGAATACGATTATAAATGCGCAGAGTGTGAATACCATACGAACATCAAGAACAATTTTGAAAACCACATAAATACAAAACATCTTAAATTAAGCGATTATAAATGCATGGAATGTGAATATCAGACGAACTTCAAGTCAAATTTAGAAAGACACATAAAGACAAAACATCTTAAATCAAGCGATTATAAATGCTTGGAGTGCGAATATCAAACAAATTATAAATCACGTTTACAAGAGCACATAAAGTCAAAACATCTTAAAGAATACGATTATAAATGCGCAGAGTGTGAATACCATACGAACGTCAAGAACAATTATGAAAAGCACATAAATACAAAACATCTTAAATTAAGCGATTATAAATGCATGGAATGTGAATATCAGACGAACTTCAAGACAAATTTGAAAATACACGTAAAGACAAAACATTTTAAATTAAACGATTATAAATGCAAGGAGTGTGAATACCAAACGAGCAGCAAGTCAAATTTGGAAGTACACATAAAGAGAAAACATCTTAAATTAAAGGATTATAAATGCGCAGAGTGCGAATACCAGACGAACTTGAAGTCAAATTTAGAAAAACACATCAAGACAAAACATCTTAAATTAAGCGATTATAAATGTATGGAGTGTGAATACCAGACAAACTTAAAGTCAAATTTAGAAAGACACATAAAGACAAAACATACTTAA
- Protein Sequence
- MYNADFRHHTNEHYKIKMYKSGICNRRYKGKESLNTHVEKIIIVVNEGRNIQKYSACDYSNDGEQKCQCTKCKFKKRHNCHLKSLIEVKHLNRGKYKCKNCEFMTYYRTYLEKHMKMKHLMECNYKCAKCEYQTKSKSTLERHINTKHLKLSDYKCMECEYQTNFKTNLKTHVKTKHLKSSDYKCLECEYQTNLKSNLERHIKTKHLKSSDYKCLECEYQTNYKSRLQEHIKSKHLKEYDYKCAECEYHTNVKNNFEKHINTKHLKTSDYKCMECEYQTNFKSSLEKHVKTKHLKSSDYKCLECEYQTNYKSRLQEHIKSKHLKEYDYKCAECEYHTNVKNNFEKHINTKHLKLSDYKCMECEYQTNFKSNLEKHIKTKHLKSRDYKCLECEYQTNFKRDLERHRKTKHLKSSDYKCMECEYQTNFKSSLEHHVKTKHLKLSDYKCLECEYQTNFKSSLERHIKIKHLKSSDYKCLECEYQTNYKSRLQEHIKSKHLKEYDYKCAECEYHTNIKNNFENHINTKHLKLSDYKCMECEYQTNFKSNLERHIKTKHLKSSDYKCLECEYQTNYKSRLQEHIKSKHLKEYDYKCAECEYHTNVKNNYEKHINTKHLKLSDYKCMECEYQTNFKTNLKIHVKTKHFKLNDYKCKECEYQTSSKSNLEVHIKRKHLKLKDYKCAECEYQTNLKSNLEKHIKTKHLKLSDYKCMECEYQTNLKSNLERHIKTKHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00990459;
- 90% Identity
- -
- 80% Identity
- -