Mmel033101.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000274.1:304085-305539[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00015 0.018 18.9 0.4 1 23 19 42 19 42 0.96 2 14 0.083 9.7 10.3 2.9 1 23 103 126 103 126 0.97 3 14 0.0018 0.21 15.5 0.7 1 23 132 155 132 155 0.98 4 14 7.8e-05 0.0091 19.8 3.4 1 23 161 184 161 184 0.98 5 14 0.00063 0.074 17.0 1.4 1 23 190 213 190 213 0.98 6 14 0.00051 0.06 17.3 3.4 1 23 219 242 219 242 0.98 7 14 3.4e-05 0.004 21.0 1.0 1 23 248 271 248 271 0.98 8 14 0.00033 0.039 17.8 0.5 1 23 277 300 277 300 0.96 9 14 0.00076 0.089 16.7 1.2 1 23 306 329 306 329 0.98 10 14 2.8e-05 0.0032 21.2 2.0 1 23 335 358 335 358 0.98 11 14 0.00011 0.013 19.4 1.5 1 23 364 387 364 387 0.98 12 14 0.00039 0.045 17.6 2.9 1 23 393 416 393 416 0.98 13 14 0.00047 0.054 17.4 0.5 1 23 422 445 422 445 0.98 14 14 0.004 0.47 14.4 3.0 1 23 451 474 451 474 0.98
Sequence Information
- Coding Sequence
- ATGTACAACGCCGTCTTCAGACAACACACTAATGAGCATTACGGTGTGAAATTGTACAAATGTGGTATTTGTGACAAAATATACAGGGGGAAGGAATATCTCAAGGCGCACGTGGAAAAAAAGCATGCTGACAATGAGGGAACATGTGACTACTTCAATGCTACTATTAAAAATATAAAACAGAGATCTCGACCCTTAGAGCATGTTGTTGGAAAACATTGTCAATGCTCAAAATGCAAGCCTCGAACAGGATCCAAACGTTATCTAAAGCCACTTATAAACATAAAGCATCTAATCAGTGGCAAATATAAGTGCGCAAATTGCGAGTTTAAGACATATTACAGGACTTATTTGCAAATGCATATGAAGATAAAACATCTCATGGGATCTAATTATAAATGCATGGAGTGTGAATTCGAGACAGGTTACAAGTCAAGTTTACAAATACACATGAAAACAATACATCTGAAACAAAATTATTATAAATGCGCAGAGTGTAAATACAAGACGAGCCACAAGCCAAATTTAAAAAGACACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGCTGAGTGTGAATACAAGACAGGCCACAAGTCAAGTTTAGAAAGCCACATAAAAACAATACATCTTAAAGTAAGCGATTATAAATGCGTAGAGTGTGAATACAAGACAAACCACAAGCCAAATTTACAAAAACACATAAAAACAAGACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACATGACAAACTACAAGTCAAGTTTAGAAAAACACATAAAAACAATACATCTTAAAGTATGCGATTATAAATGCGAAGAGTGTGAATACATGACAAACTACAAGTCAAGTTTACAAATACACATTAAAGCAATGCATCTGAAACAAAATGATTATAAATGCGTAGAGTGTGAATACAACACAAGCCACAAGCCAAGTTTAGAAAACCACATAAAAACAATACATCGTAAAGTAAGCGATTATAAATGCGCAGAGTGTGAATATATGACAAACCACAAGTCAAATTTAGAAAAACACATAAAAACAATACATCTTAGAGTAAGCGATTATAAATGCGTAGAGTGTGAATACATGACAAACTACAAGTCAACATTAAAACGACACATAAAGACAGTACATTTGAAAATAACCGATTATAAATGTGCAGTTTGTGAATACAAGACAAACCACAAGCGAAATTTAGAGAGACACTTAAAAACAATACATCTTAAATTAAGCGATTATAATTGCGTAGAGTGTGAATACAAGACAAACTACAAGTCTGCACTAGAAAGACACATAAAGACAGTACATCTGGAAGTAACCGATTATAAATGTGCAGAGTGTGAATACAAGACAAACCACAAGCTAAATTTTGAAAAACATATAAAAACAATACATCCTAAAGTTAACGATTATAAATGCGCAGTGTGA
- Protein Sequence
- MYNAVFRQHTNEHYGVKLYKCGICDKIYRGKEYLKAHVEKKHADNEGTCDYFNATIKNIKQRSRPLEHVVGKHCQCSKCKPRTGSKRYLKPLINIKHLISGKYKCANCEFKTYYRTYLQMHMKIKHLMGSNYKCMECEFETGYKSSLQIHMKTIHLKQNYYKCAECKYKTSHKPNLKRHIKTIHLKVSDYKCAECEYKTGHKSSLESHIKTIHLKVSDYKCVECEYKTNHKPNLQKHIKTRHLKVCDYKCEECEYMTNYKSSLEKHIKTIHLKVCDYKCEECEYMTNYKSSLQIHIKAMHLKQNDYKCVECEYNTSHKPSLENHIKTIHRKVSDYKCAECEYMTNHKSNLEKHIKTIHLRVSDYKCVECEYMTNYKSTLKRHIKTVHLKITDYKCAVCEYKTNHKRNLERHLKTIHLKLSDYNCVECEYKTNYKSALERHIKTVHLEVTDYKCAECEYKTNHKLNFEKHIKTIHPKVNDYKCAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -