Mmel064383.2
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000534.1:2114734-2119136[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.2 3.7e+02 5.3 3.5 1 23 69 91 69 91 0.97 2 23 0.023 2.7 12.1 0.4 1 23 97 120 97 120 0.94 3 23 0.066 7.7 10.6 5.3 1 23 186 209 186 209 0.98 4 23 0.12 15 9.8 4.2 1 23 215 238 215 238 0.97 5 23 0.0038 0.44 14.5 1.1 1 23 244 267 244 267 0.98 6 23 0.0014 0.16 15.9 2.3 1 23 273 296 273 296 0.98 7 23 0.00038 0.045 17.7 0.4 1 23 302 325 302 325 0.98 8 23 0.038 4.5 11.4 3.8 1 23 331 354 331 354 0.98 9 23 0.58 67 7.7 4.6 1 23 360 383 360 383 0.96 10 23 0.072 8.3 10.5 3.4 2 23 389 411 388 411 0.97 11 23 0.00013 0.015 19.2 1.5 1 23 417 440 417 440 0.98 12 23 0.0084 0.98 13.4 2.7 2 23 447 469 446 469 0.96 13 23 0.026 3 11.9 2.0 1 23 475 498 475 498 0.97 14 23 0.0009 0.1 16.5 3.5 1 23 504 527 504 527 0.98 15 23 0.0029 0.34 14.9 3.8 1 23 533 556 533 556 0.98 16 23 0.0009 0.1 16.5 3.5 1 23 618 641 618 641 0.98 17 23 0.0009 0.1 16.5 3.5 1 23 647 670 647 670 0.98 18 23 0.00053 0.062 17.2 3.5 1 23 676 699 676 699 0.98 19 23 0.0009 0.1 16.5 3.5 1 23 705 728 705 728 0.98 20 23 0.0009 0.1 16.5 3.5 1 23 734 757 734 757 0.98 21 23 0.0023 0.26 15.2 1.4 1 22 763 784 763 784 0.97 22 23 0.00083 0.096 16.6 1.2 1 23 792 815 792 815 0.98 23 23 5.4 6.2e+02 4.6 0.4 8 23 835 851 834 851 0.88
Sequence Information
- Coding Sequence
- ATGCAACCAATATTGCAACACGTCACTTGGGTTACAACCTATTATGAAGGCACGATCATATTATTGCATGTAAATGTTTATAAATTTTATTCGAATTCATTTACTTTCAGAAACTGCGCAGTTCCCTCAGCGAAGGTTCACGAGCTAGAAATAGAAAGGCGTCCATCTTTAAGAAGCAGGGCCAAACGATGGAAGCGTGGAATATACAAATGTACGCAATGCAAGTTCAGAACAATGTACAACGCCGACTTCAGGTACCACACTAACGAACATTACAAAGTGAAAATGTACAAATGTGGAATTTGTCGCAGAAGATACAAGGCGAGGGAATCACTTGAGACGCACGTGGTAAAAATTCATGCTGACAATGCAGGAAGAGATGTCCAAAATTACTCTACGCGTGCCTCGTTTAAAGCTAATATTAAAAATCAGAAAAAAAGATCTGCACACTCACATGGCGATAAAAAACAATGTCCGTGCTCGAAATGCAAATTTCAAAAAAGGAACAAATGTCACTTAAAAACACATGCAAACATAAAACAACCGTACAGGAAATATAAGTGTACACATTGCGAGTTTAAGACATATTACAGGTCTTATTTAGAAATGCACATTAAAATGAAACATCTCATGGACGGTTATTTTAAATGCAGGAAATGTCATTACCAGACGAACGTCAAGTCAAGTTTGGAAGTACACACAAAGATAAAACATCTGAAACAAAAGGATTATGAATGCGCAGAATGTGAATACAAGACAAAAAACAGACGGCTATTAAAGGCGCACGTGAAAACGAAACATCTTAAAGAATATGATTTTAAATGCGGAGAGTGTGAATACAAGACAAATAGGAAGCCACATTTAAAATTGCACATAAAGACAATACATCTTAAAGAATACGATTATAAATGCGCACAATGTGAATACAAAACAAACAACAAGTGGAATTTAGAAGCACACATAAAGACAGTACATCTTAAAGTAGCCGATTTTAAATGTGCAGAATGTGAATACAAAACAAACATCAAGTCACATTTAAAATACCACATGAACTCAAAACATCTTAAAAAAAGTATTTATAAATGCTCAGAGTGTGACTTTAAAACACACTACAAGCTAAGTTTAAAAAAACACACAAAGGCACTACATCTTAAAATCAATAATAAATGCGCAATATGTGAATTCAAGACAAACAAGAAGTCATGTTTAGAAAGACACCTAAAGACAGTTCATTTTAAAATAAGCGATTATAGATGCGCAGAATGTGAATACATGACAAACAACAAGTCACATTTAGAAAGACACCTAATGACAGTTCATCTTAAAATAACCTATTGCAAATGCGCAGAGTGTGATTTCCAGGCAAGATACAAGTCAGAATTAATAAAACACATGAAAACAAGACATTTTAAAGAATACGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCACAAGCCAGATTTAGTAAAACACGTAAAATCAAAACATCTTAAGGAACACGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCACAAGTCACAGTTAGTAAAACACATAAAAACAAAACATCTTAAGGAACATGATTACAAATGCACAGAGTGTGAGTACAAGACGAACCACAAGTCAGATTTAGTAAAACACGTAAAATCAAAACATCAATTGTTATCCGAGTTTGTCCGAAGCCATAGCGATAGTGACACAGAGTACCATTCAAAGCGAACCTTGCTAGCGATTGTCGATATTGATACTCGCTTTGTAGCAGTAGACGTCGAGATCACACAGAGTCCCACTGCAGATTTAGTAAAACACATAAAAACAAAACATCTTAAAGAACATGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCACAAGTCACAGTTAGTAAAACACATAAAAACAAAACATCTTAAAGAACACGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCACAAGTCACAGTTAGTAAAACACATAAAAACAAAACATCTTAAAGAACAAGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCACAAGTCACAGTTAATAAAACACATAAAAACAAAACATCTTAAAGAACACGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCACAAGTCACAGTTAGTAAAACACATAAAAACAAAACATCTTAAAGAACACGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCACAAGTCACAGTTAGTAAAACACATAAAAACAAAACATCTTAAAGAACACGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCACAAGTCACAGTTAGTAAAACACATAAAAACAAAACAACTTAAACAACACAATTACAAATGCGCTGAGTGTGAGTACAAGACGAGGTACAAGTCAGAGTTAGTAAAACACATAAAAATAAAACATCTTAAGGACACAATTACAAATGCGCTGAGTGTGATGATTATAAATGCGCAGCGTGATTACAAGACAAACCACAAGTCAGAGTTAGCAAAACACATAGAGACCCTACATCTTAAAATAAGAGATTATAAATGCCCAGAATGTGAATACAAATACACAATTGTAACTACGCAGAGTATGAATACAAAACAAATAACAGGACAGCTGGTGATAAAACATCTTAAACAAAGCAATTATAAATGTCATTGGTGGCGAATACAAAACGTGAAAGTAACACATTTTAAAACAAGCGATTATATGTGTATGGACTCTGAATTCAAGACAAATACACTCAAAATCACCAAAGATGATCCCTGCGTCACTTACGAACGATATTCAAAGAATAATCTCCACATCCAAATAACAAACTGCTCCTACTTGTATGTCAAGGATAGCTTGAACGAAACTATATATTTTGAAATTTCGCCTCGCATGGACATACGGCTCAGGCAATTTACTTGA
- Protein Sequence
- MQPILQHVTWVTTYYEGTIILLHVNVYKFYSNSFTFRNCAVPSAKVHELEIERRPSLRSRAKRWKRGIYKCTQCKFRTMYNADFRYHTNEHYKVKMYKCGICRRRYKARESLETHVVKIHADNAGRDVQNYSTRASFKANIKNQKKRSAHSHGDKKQCPCSKCKFQKRNKCHLKTHANIKQPYRKYKCTHCEFKTYYRSYLEMHIKMKHLMDGYFKCRKCHYQTNVKSSLEVHTKIKHLKQKDYECAECEYKTKNRRLLKAHVKTKHLKEYDFKCGECEYKTNRKPHLKLHIKTIHLKEYDYKCAQCEYKTNNKWNLEAHIKTVHLKVADFKCAECEYKTNIKSHLKYHMNSKHLKKSIYKCSECDFKTHYKLSLKKHTKALHLKINNKCAICEFKTNKKSCLERHLKTVHFKISDYRCAECEYMTNNKSHLERHLMTVHLKITYCKCAECDFQARYKSELIKHMKTRHFKEYDYKCAECEYKTNHKPDLVKHVKSKHLKEHDYKCAECEYKTNHKSQLVKHIKTKHLKEHDYKCTECEYKTNHKSDLVKHVKSKHQLLSEFVRSHSDSDTEYHSKRTLLAIVDIDTRFVAVDVEITQSPTADLVKHIKTKHLKEHDYKCAECEYKTNHKSQLVKHIKTKHLKEHDYKCAECEYKTNHKSQLVKHIKTKHLKEQDYKCAECEYKTNHKSQLIKHIKTKHLKEHDYKCAECEYKTNHKSQLVKHIKTKHLKEHDYKCAECEYKTNHKSQLVKHIKTKHLKEHDYKCAECEYKTNHKSQLVKHIKTKQLKQHNYKCAECEYKTRYKSELVKHIKIKHLKDTITNALSVMIINAQRDYKTNHKSELAKHIETLHLKIRDYKCPECEYKYTIVTTQSMNTKQITGQLVIKHLKQSNYKCHWWRIQNVKVTHFKTSDYMCMDSEFKTNTLKITKDDPCVTYERYSKNNLHIQITNCSYLYVKDSLNETIYFEISPRMDIRLRQFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -