Mmel074990.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melolontha melolontha
Gene Symbol
-
Assembly
GCA_935421255.1
Location
CAKXYX010000622.1:1651136-1653412[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.18 21 9.2 4.5 1 23 7 29 7 29 0.99
2 21 0.0017 0.19 15.7 0.4 1 23 35 58 35 58 0.96
3 21 0.16 18 9.4 2.8 1 23 125 148 125 148 0.98
4 21 1.2 1.4e+02 6.6 4.3 1 23 155 178 155 178 0.98
5 21 0.0022 0.26 15.2 3.5 1 23 206 229 206 229 0.98
6 21 0.00036 0.042 17.7 4.2 1 23 235 257 235 257 0.98
7 21 0.0022 0.25 15.3 3.1 1 23 263 286 263 286 0.98
8 21 0.017 2 12.5 1.5 1 23 309 332 309 332 0.98
9 21 0.017 2 12.5 0.7 2 23 339 361 338 361 0.97
10 21 0.00035 0.041 17.8 2.0 1 23 367 390 367 390 0.98
11 21 0.00011 0.013 19.3 4.5 1 23 396 419 396 419 0.98
12 21 0.0022 0.25 15.3 3.1 1 23 425 448 425 448 0.98
13 21 0.017 2 12.5 1.5 1 23 471 494 471 494 0.98
14 21 0.015 1.8 12.6 1.8 1 23 500 523 500 523 0.98
15 21 0.00035 0.041 17.8 2.0 1 23 529 552 529 552 0.98
16 21 0.00036 0.042 17.7 4.2 1 23 558 580 558 580 0.98
17 21 0.005 0.58 14.2 2.9 1 23 586 609 586 609 0.98
18 21 0.0028 0.32 15.0 3.0 1 23 617 640 617 640 0.98
19 21 0.0061 0.72 13.9 0.9 1 23 646 669 646 669 0.98
20 21 0.00035 0.041 17.8 2.0 1 23 675 698 675 698 0.98
21 21 0.00011 0.013 19.3 4.5 1 23 704 727 704 727 0.98

Sequence Information

Coding Sequence
ATGTGGAAGCGTCGAATGTACAAATGTACGCAATGCAAGTTCAGAACAATGTACAACACTGATTTCAGGAACCATATTAACAAGCATTACGAGATGAAAATGTACAAATGTGTAATCTGTGACAGAAGATACAAAGCGAGGACATCTTTAAAGGCGCACGTGGAAAAAATTCATTCCGACAATGAAGGCAGGGATGTCGAAAAATACTCTGCGTCTGACTATTTCAAAGCTAATATTAAAACTATGAAAGAGACATCTCCACATTCACACGATGGTAAAAAACAATGTAAATTCTCGAAATGCAAATTTCAAACAAGCGACAAATATCACGTAAAATCACTTGTAAAAATAAAAAGTCTGAACAGAGGCAAATATAAATGCGCAAATTGCGAGTTTAAGACATACTACAGAACTTATTTAGAAATGCACATGAAAATGAAACATCTCGTAATAGAAACTGATTATAAATGCAGGCAGTGTGAATTCAATGCAAACTACAAGTCCGTTTTACATAAACACATAAAAACAAAACATCTGAAACAAAAAAAATTCCAGACGAACTACCAGTCATCTTTACAAGACTACATAAAATCCAAATATGTTAAAGTATACGATTATAAATGCGCAAGGTGTGAATATCAGACAAACAACAAGTCACATCTACAAGTCCACATAAAAACTAAGCATCTAAAACAAAGGGATTATAAATGCTCAGAGTGTGAATACAGGACATGCCGCAATTCAAATTTAAAAGTACACATAACGAAACATCTTAAAGTAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACAAACTACAAGTCACATCTACAAGAGCACATAAGATCTAAACATCTTAAAGTAAACGACAAGTCACGTCTGCAATTACATATAAAAGCAAAGCATCTCAAACAAAAGGATTATAAATGCGCAGAGTGTGAATACCAGACAAATATCAAGTCACGTCTACAAAGACACATAAAAACAAAGCACCTGAAACAATATGATATTAAATGCGCGGAGTGTGAATACCAGACAAACGACAAGTCACGTCTACAAGAACACATAAAAACAAAGCATCTGAAACAATATGATTATAAATGCGCCGGGTGTGAATACCAGACAAACGATAAGTCACATCTACAAGTCCACATAAAAACCAAGCATCTAAGACAAAAGGATTATAAATGCTCAGAGTGTGAGTACAGGACATGCCGCAATTCAAATTTAAAAGTACACATAAAAACGAAACATCTTAAAGTAAGAGATTATAAATGTGTGGAGTGTGAATACCAGACAAACTACAAGTCACATCTACAAGAGCACATAAGATCTAAACATCTTAAAGTAAACGACAAGTCACGTCTGCAATTACATATAAAAGCAAAGCATCTCAAACAAAAGGATTATAAATGCGCAGAGTGTGAATACCAGACAAATATCAAGTCACGTCTACAAAGACACATAAAAACAAAGCACCTGAAACAATATGATTTTAAATGCGCGGAGTGTGAATACCAGACAAACTACAAGTCACGTCTACAAGAACACATAAAAACAAAGCATCTGAAACAATATGATTATAAATGCGCCGGGTGTGAATACCAGACAAACGATAAGTCACATCTACAAGTCCACATAAAAACGAAGCATCTAAAACAAAAGGATTATAAATGCTCAGAGTGTGAGTACAGGACATGCCGCAATTCAAATTTAAAAGTACACATAACGAAACATCTTAAAGTAAGCGATTATAAATGCGCGGAGTGTGAATACCAGACAAACTACAAGTCACATCTACAAGAGCACGTAAGATCTAAACATCTTAAAGTAAACCAAAAGGATTATAAATGCGCAGAGTGTGAATACCAGACAAATATCAAGTCACATCTACAAAGACACATAAAAACAAAGCACCTGAAACAATATGATTTTAAATGCGCGGAGTGTGAATACCAGACAAACGACAATTCACGTCTACAAGAACACATAAAAACAAAGCATCTCAAACAATATGATTATAAATGCGCAGGGTGTGAATACCAGACAAACGATAAGTCACATCTACAAGTCCACATAAAAACCAAGCATCTAAAACAAAAGGATTATAAATGCTCAGAGTGTGAGTACAGGACATGCCGCAATTCAAATTTAAAAGTACACATAAAAACGAAACATCTTAAAGTAGCGATTATAAATGCGCGGAGTGTGAATACCAGACAAACTACAAGTCATCTTTACAAGAGCACATCAAAACAAAACATCTTAAAGTAA
Protein Sequence
MWKRRMYKCTQCKFRTMYNTDFRNHINKHYEMKMYKCVICDRRYKARTSLKAHVEKIHSDNEGRDVEKYSASDYFKANIKTMKETSPHSHDGKKQCKFSKCKFQTSDKYHVKSLVKIKSLNRGKYKCANCEFKTYYRTYLEMHMKMKHLVIETDYKCRQCEFNANYKSVLHKHIKTKHLKQKKFQTNYQSSLQDYIKSKYVKVYDYKCARCEYQTNNKSHLQVHIKTKHLKQRDYKCSECEYRTCRNSNLKVHITKHLKVSDYKCVECEYQTNYKSHLQEHIRSKHLKVNDKSRLQLHIKAKHLKQKDYKCAECEYQTNIKSRLQRHIKTKHLKQYDIKCAECEYQTNDKSRLQEHIKTKHLKQYDYKCAGCEYQTNDKSHLQVHIKTKHLRQKDYKCSECEYRTCRNSNLKVHIKTKHLKVRDYKCVECEYQTNYKSHLQEHIRSKHLKVNDKSRLQLHIKAKHLKQKDYKCAECEYQTNIKSRLQRHIKTKHLKQYDFKCAECEYQTNYKSRLQEHIKTKHLKQYDYKCAGCEYQTNDKSHLQVHIKTKHLKQKDYKCSECEYRTCRNSNLKVHITKHLKVSDYKCAECEYQTNYKSHLQEHVRSKHLKVNQKDYKCAECEYQTNIKSHLQRHIKTKHLKQYDFKCAECEYQTNDNSRLQEHIKTKHLKQYDYKCAGCEYQTNDKSHLQVHIKTKHLKQKDYKCSECEYRTCRNSNLKVHIKTKHLKVAIINARSVNTRQTTSHLYKSTSKQNILK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-