Mmel056449.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000473.1:652391-658355[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.9 3.4e+02 5.4 5.5 1 23 151 173 151 173 0.98 2 20 0.00031 0.036 17.9 0.7 1 23 179 202 179 202 0.96 3 20 0.36 42 8.3 3.0 1 23 268 291 268 291 0.97 4 20 0.23 27 8.9 0.8 2 23 298 320 297 320 0.95 5 20 0.0063 0.73 13.8 4.0 1 23 326 349 326 349 0.98 6 20 0.00018 0.021 18.7 2.0 1 23 355 378 355 378 0.98 7 20 0.13 15 9.7 1.2 1 23 384 407 384 407 0.96 8 20 0.011 1.2 13.1 4.6 1 23 413 436 413 436 0.98 9 20 0.0048 0.56 14.2 1.0 1 23 442 465 442 465 0.98 10 20 0.0003 0.035 18.0 1.5 1 23 471 494 471 494 0.98 11 20 0.0043 0.5 14.4 1.3 1 23 500 523 500 523 0.98 12 20 0.00042 0.049 17.5 2.0 1 23 529 552 529 552 0.98 13 20 0.00063 0.073 17.0 1.5 1 23 558 581 558 581 0.98 14 20 0.00064 0.075 17.0 1.1 1 23 587 610 587 610 0.98 15 20 0.00076 0.088 16.7 1.8 1 23 616 639 616 639 0.98 16 20 0.00075 0.088 16.7 1.1 1 23 645 668 645 668 0.98 17 20 0.00062 0.072 17.0 2.1 1 23 674 697 674 697 0.98 18 20 0.0062 0.72 13.9 2.8 1 23 703 726 703 726 0.98 19 20 0.00013 0.015 19.1 2.3 1 23 732 755 732 755 0.98 20 20 0.011 1.3 13.0 0.9 1 23 761 784 761 784 0.98
Sequence Information
- Coding Sequence
- ATGCAAAATGAATATATTAACCTAAAAGAGGCGATAATTAACTTAGAAACCGTTATCGATCGAATGAAAAGTAAGCCTTCTGAATTTGAAAACAAGCTTAGACAAAAAGTCGATGGCATATTTAGCAGAAATCCAGATTTGAATATATTATATCAATTCTGCACAGAGCCGATTGAAAAATCTATACATTCGAAGTATGGTGCACTTTTGCAACATTTTAATCACACGCCCAGTTGTGATGTGGAAAGGACATTTTCTATTTTTAAAGACGCTTTAACATCTAAAAGAACTAATTTAACACAGGAACACCTTGAACAAATTTTAGTTGTTTTTAAATTTAATTCGAATTCATTGAATTTCAGAGACTGCGTCCTTCCTACACCGAAGGTTCGCGAGGTAGAAGTAAGAAGATCTATGAGAAGCAAAGTCAAAAAATGGAAGCTGGGAATGTACAAATGTACGCAATGCAAGTTCAAGACAATGTACAACGCCGACTTCAGGCACCACACTAACGAGCATTACAAGGTGAAAATGTACAAATGTGGAATTTGTGGCCGAAGATATAATGGAAAGAAATCTCTCAAGACACACGTGGAAAAAATCCATATTAACAATGAAGGAAGAGATATTCAAAGATATTCTGCGTGTGACTATTCAAAAGCTAATAAAAATACAAAAGAGAGGTCTACACATTCACAAGATGGTGAAAAACAATACCAATGGACGAAATGCAAGTCCCAAACAAGGCACAAATGTCACTTAAAATCACTTATAAAAACAAAAGATTTGAACAGAGGCAAATATAAGTGCGTAAATTGCGAGTTTAAGACATATTACAGGACTTACTTAGAAAGGCACACGAAAATAACCCATCTCATGGAAAGTAATAATAAATGCGCAGAGTGTGAATTTAAGACAAACTACAAACCAAATTTAGTAAAACACTTAAAGGCAAAACATTTGAAATCGAGGGATTATAAATGCATGAAGTGTGACTATCAAGCGAATAGGAAGTCACATTTGAATATGCACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCAGGGAGTGTGAATATAAAACGAATAGGAAGTCAAATTTGGAAGTGCATATAAAGTCAAAACATCTTAAATTATGCGATTATAAATGCATGGAGTGTGAATACCAGACGAGTTTCAAAGGAGACTTAGATAGACACACAAAGGCAAAACATCTTAAATCAAGAGATTATAAATGCATGCAATGTGAATATCAAACGAATAGGAAGTCACATTTGAATATGCACATAAAGTCAAAACACCTTAAATTACTCGATTATAAATGTATGGAGTGTGAATATCAAACAAATAGGAAGCCAAATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACTCGATTATAAATGCATGGAGTGCGGATATCAAACGAATAGCAAGTCAGATTTGAAAATGCACATAAAGTCAAAACATCTTAAATTATTCCATTATAAATGCGTGGAGTGTGAATACCAGACGAATAGCAAGTCGTATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTAAATATCAAACAAATAGGAAGTCAAATTTGGAAGTGCACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCAGGGAGTGTGAATATCAAACGAATAACAAGTCAAATTTGGAAATGCACATAAAGTCAACACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATATCAAACAAATAGCAAGTCAAATTTGGAAGTGCACATAAAGTCAAAACACCTTAAATTACTCGATTATAAATGCAGGGAGTGTGAATATCAAACGAATAACAAGTCAAATTTGGAAATGCACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATATCAAACGAATAGCAAGTCAAATTTGGAAATCCACATCAAGTCAAAACATCTTAAATTATGCGATTATAAATGCAGGGAGTGTGAATATCAAACGAATAGGAAGACAGATCTGAAAAGGCACATAAAGTCAATACATCTTAAATTACTCGATTATAAATGCATGGAGTGTGAATATCAAACGAATAAGAAGACAGATCTGAAAAGGCACATAAAGTCAAAACACCTTAAATTACTCGATTATAAATGCAAGGATTGTGAATATCAAACGAATAGGAAGGCAGATCTGAAAAGGCACATAAAGTCAAAACACCTTAAATTACTCGATTATAAATGCATGGAGTGTGAATATCAAACGAATAGGAAGCCATATTTGGAAGTGCACATAAAGTCGAAACATCTTAAATCAAGCGATTATAAGTGCATGAAGTGTGAATACCAGACGAACTACAAGTAA
- Protein Sequence
- MQNEYINLKEAIINLETVIDRMKSKPSEFENKLRQKVDGIFSRNPDLNILYQFCTEPIEKSIHSKYGALLQHFNHTPSCDVERTFSIFKDALTSKRTNLTQEHLEQILVVFKFNSNSLNFRDCVLPTPKVREVEVRRSMRSKVKKWKLGMYKCTQCKFKTMYNADFRHHTNEHYKVKMYKCGICGRRYNGKKSLKTHVEKIHINNEGRDIQRYSACDYSKANKNTKERSTHSQDGEKQYQWTKCKSQTRHKCHLKSLIKTKDLNRGKYKCVNCEFKTYYRTYLERHTKITHLMESNNKCAECEFKTNYKPNLVKHLKAKHLKSRDYKCMKCDYQANRKSHLNMHIKSKHLKLHDYKCRECEYKTNRKSNLEVHIKSKHLKLCDYKCMECEYQTSFKGDLDRHTKAKHLKSRDYKCMQCEYQTNRKSHLNMHIKSKHLKLLDYKCMECEYQTNRKPNLEMHIKSKHLKLLDYKCMECGYQTNSKSDLKMHIKSKHLKLFHYKCVECEYQTNSKSYLEMHIKSKHLKLHDYKCMECKYQTNRKSNLEVHIKSKHLKLHDYKCRECEYQTNNKSNLEMHIKSTHLKLHDYKCMECEYQTNSKSNLEVHIKSKHLKLLDYKCRECEYQTNNKSNLEMHIKSKHLKLHDYKCMECEYQTNSKSNLEIHIKSKHLKLCDYKCRECEYQTNRKTDLKRHIKSIHLKLLDYKCMECEYQTNKKTDLKRHIKSKHLKLLDYKCKDCEYQTNRKADLKRHIKSKHLKLLDYKCMECEYQTNRKPYLEVHIKSKHLKSSDYKCMKCEYQTNYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -