Mmel141116.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001525.1:341991-343832[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.1 4.8e+02 5.0 3.2 2 23 3 24 2 24 0.97 2 18 0.00046 0.054 17.4 1.5 1 23 30 53 30 53 0.96 3 18 0.13 15 9.7 4.6 1 23 120 143 120 143 0.98 4 18 0.0025 0.3 15.1 2.4 1 23 149 172 149 172 0.98 5 18 0.018 2.1 12.4 0.4 1 23 207 230 207 230 0.97 6 18 7.8 9.1e+02 4.1 4.5 1 23 236 259 236 259 0.95 7 18 0.0011 0.13 16.2 2.5 1 23 265 288 265 288 0.98 8 18 0.00018 0.02 18.7 0.9 1 23 294 317 294 317 0.98 9 18 5.1e-05 0.0059 20.4 1.9 1 23 323 346 323 346 0.98 10 18 0.00038 0.045 17.7 2.2 1 23 352 375 352 375 0.98 11 18 0.014 1.7 12.7 1.4 1 23 381 404 381 404 0.98 12 18 0.0011 0.13 16.2 2.5 1 23 410 433 410 433 0.98 13 18 6e-05 0.007 20.2 0.6 1 23 439 462 439 462 0.98 14 18 0.00013 0.016 19.1 0.6 1 23 468 491 468 491 0.98 15 18 4.4e-05 0.0051 20.6 1.1 1 23 497 520 497 520 0.98 16 18 0.00011 0.013 19.3 2.0 1 23 526 549 526 549 0.98 17 18 0.00038 0.045 17.7 2.2 1 23 555 578 555 578 0.98 18 18 0.0014 0.16 15.9 1.6 1 23 584 607 584 607 0.96
Sequence Information
- Coding Sequence
- ATGGACAAATGTACGCAATGCAAGTTCAAAACAATGTACAACGCCGACTTTAGGTACCACACTAATAAGCATGACGAAGTGAAAATGTACAAGTGTGAAATTTGTCATAGAAGATACAAGGCGAAGGAATCTCTCAAGGCGCACGTGGAAAAAATTCATGCTGACAATGCAGGAGGAAATGTCCAGAACTACTCTATGTGTGACTATATCCAAGCTAATATTAAAAATATAAAGAAGAGCTCTGCACACTTACGTGATGGTTTAAAGCAATGTCCATACTCGAAATGCAAATTTCAAACGAGGAACACATGTCACTTAAAATCACATACAAAAATAACACATCCGAACAGAGGCAAATATAAGTGCGCACATTGCGAGTTTAAGACATATTACAGGTCTTATTTAGAAATGCACTTGAAAATGAAACATCCCATGGAAAGTTCTTATAAATGCAGGGAGTGTCAATACCAGACGAATTTCAAATCAAGTTTGGAAGTACACATAAAGACAAAACATCTGAAACAGAAGGATTATAAATGCGCAGAGTGTGAATACGAAATAAACTGTAAGTCACGTTTAATAGCACACGAGAAAACGAAACACCTTAAAGAACACGATTATAGTTGTGCCGCATGTGAATACAAGACAAACGTGAAGTCAAATTTACTAAGACATGTAAAAACAATACATCTAAAAGAACACAATCATAAATGCATAGAGTGTGAATTCAAGACAAATCACAAGTCAAGTTTAGATATACACGTTAAAACGAAACATCTTAAAGCACGCAATTATAAATGCACAGAGTGTGAATTCACGGCATATCACAAGTCAAATTTGGAAGTACACATTAAATCGAAACATCTTAAAATAAGCGATTATAAATGCGCAGAGTGTGAATACGAGACAAGTAAGAAGTCAAATTTAAACGCACATGTGAAAACGAAACATCTTAAAATAAGCGATTATAAGTGCGCAGAGTGTGAATACAAGACAAGTAAGAAGTCAAATTTAAAAAGACATGTAAAAACAATACATCTTAAGGAACACAATTATAAATGCACAGAGTGTGAATACAAGACAAATCGCAAGTCAAGTTTAGAATTACACGTTAAAACGAAACATCTTAAAATAAGCGACTATAAATGCGTAGAGTGTGAATACAAGACAAATAAGAAGTCAAGTTTAGATATACACGTTAAAACGAAACATCTTAAAGCACGCAATTATAAATGCACAGAGTGTGAATTCACGGCATATCACAAGTCAAATTTGGAAGTACACATTAAATCGAAACATCTTAAAATAAGCGATTATAAGTGCGCAGAGTGTGAATACGAGACAAGTAAGAAGTCAAATTTAGAAGCACACATTAAAACGAAACATCTTAAAATAAGCGATTATAAGTGCGCAGAGTGTGAATACGAGACAAATAAGAAGTCAAATTTAGAAGCACACATTAAAACGAAACATCTTAAAATAAGCGATTATAAGTGCGCAGAGTGTGAATACAAGACAAGTAAGAAGTCAAATTTAGAAGCACACATTAAAACGAAACATCTTAAAATAAGCGATTATAAGTGCGCAGAGTGTGAATACAAGACAAGTAAGAAGTCAAATTTAAAAAGACATGAAAAAACAATACATCTTAAAGAACACAATTATAAATGCACAGAGTGTGAATACAAGACAAATCGCAAGTCAAGTTTAGAATTACACGTTAAAACGAAACATCTTAAAATAAGCGACTATAAATGCGTAGAGTGTGAATACAAGACAAATAACAAGTCAACTTTACGAAGACATGTAACAAAAATACATCTTAAAAGAACACGATTATAA
- Protein Sequence
- MDKCTQCKFKTMYNADFRYHTNKHDEVKMYKCEICHRRYKAKESLKAHVEKIHADNAGGNVQNYSMCDYIQANIKNIKKSSAHLRDGLKQCPYSKCKFQTRNTCHLKSHTKITHPNRGKYKCAHCEFKTYYRSYLEMHLKMKHPMESSYKCRECQYQTNFKSSLEVHIKTKHLKQKDYKCAECEYEINCKSRLIAHEKTKHLKEHDYSCAACEYKTNVKSNLLRHVKTIHLKEHNHKCIECEFKTNHKSSLDIHVKTKHLKARNYKCTECEFTAYHKSNLEVHIKSKHLKISDYKCAECEYETSKKSNLNAHVKTKHLKISDYKCAECEYKTSKKSNLKRHVKTIHLKEHNYKCTECEYKTNRKSSLELHVKTKHLKISDYKCVECEYKTNKKSSLDIHVKTKHLKARNYKCTECEFTAYHKSNLEVHIKSKHLKISDYKCAECEYETSKKSNLEAHIKTKHLKISDYKCAECEYETNKKSNLEAHIKTKHLKISDYKCAECEYKTSKKSNLEAHIKTKHLKISDYKCAECEYKTSKKSNLKRHEKTIHLKEHNYKCTECEYKTNRKSSLELHVKTKHLKISDYKCVECEYKTNNKSTLRRHVTKIHLKRTRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -