Mmel148315.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001673.1:287561-289264[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.8e-05 0.0033 21.2 1.4 1 23 2 25 2 25 0.98 2 17 0.43 50 8.1 3.0 1 23 76 99 76 99 0.98 3 17 0.00025 0.029 18.2 3.4 1 23 134 157 134 157 0.98 4 17 0.00024 0.028 18.3 0.7 1 23 163 186 163 186 0.98 5 17 0.032 3.7 11.6 3.8 1 23 192 215 192 215 0.98 6 17 0.00012 0.013 19.3 2.4 1 23 221 244 221 244 0.98 7 17 0.0055 0.63 14.0 4.2 1 23 250 273 250 273 0.98 8 17 0.00066 0.076 16.9 2.6 1 23 279 302 279 302 0.98 9 17 6.2e-05 0.0073 20.1 1.7 1 23 307 330 307 330 0.98 10 17 0.0023 0.27 15.2 3.4 1 23 336 359 336 359 0.98 11 17 0.0078 0.9 13.5 0.8 1 23 365 388 365 388 0.98 12 17 0.0002 0.023 18.6 1.4 1 23 394 417 394 417 0.98 13 17 0.013 1.5 12.9 2.5 1 23 423 446 423 446 0.96 14 17 0.01 1.2 13.2 0.5 1 23 452 475 452 475 0.97 15 17 0.0019 0.22 15.5 0.6 1 23 481 504 481 504 0.98 16 17 0.0018 0.21 15.5 0.9 1 23 510 533 510 533 0.98 17 17 0.00047 0.055 17.4 1.7 1 23 539 562 539 562 0.98
Sequence Information
- Coding Sequence
- ATGTACAAATGTGAAATTTGCAGCAGGAGATACAAGACCAGGGAATCTCTGAAGGCGCACGTAAAAAAAATTCATGCGGACAATGAAGGAAGAGATGTCAAGAAACACTCTAGGTGTGACGATTTCAAAGCTAATATTAAAAATATGAAAGAGAGATCTCCACGTTCACATGCTGGTGGAAATTTAAAATCACTTCCACAAATAAAACATTTGAACAGATTGAAATATAAATGCGCAAATTGCGAGTTTAAGACATATTACAAGACTTATTTAGATATGCACATGAAAATGAAACATCTCATGATGAAAGCTGATTATAAAAGCGTGGAGTGTGAATATCAGACAAACTACAAGTTAAGTTCAGAAATACACATAAAGAGAAAACATCTGAAACAAAATTATAAATGTGCAGAGTGTGAATACCAGACATGCCGCAAGTCACATTTAGAAGCGCACATAAAGACGATACACCTTAAAGTAAGTGATTATAAATGTGCAGAGTGTGAATACAGGACAAACTATAAGTCAAACTTAGAAGTGCACATAAAAATAAAACATCTGAAACAACACGATTATAAATGCACAGAGTGTGAATACAAGACATGCCGCAAGTCAATTTTACAAGTACACATAAATAGAAAACATTTGAAACAAAAGGATTATAAATGCGTAGACTGTGAATACAAAACATACTCCAAGTCTCATTTAGAAGTGCACATGAAAACAATACATCTTAAAATAAGAGATTATAAATGCGCAGAGTGTCAACACACAACATACTTAAAGTCACATTTAGAAGCACACATCAAGACAAAACATCTTAAAGTACGAGACTATAAATGTGCAGAGTGTGAATACAGGACAAATTATAAGTCATATTTACGAGTACACATGAAAAGAAAACATGTGAAACAGGATTATAAATGCTCAGAATGTGAATACAAGACAAACAACAAGTCGTATTTAGAGGCACACATAAAGACAAAACATCTGAAACAAATGGATTACAAATGCGCAGAATGTGAATACCAGACAAACTACAAGTATCATTTACAAGTACACATAAAAACTAAACATCTGAGTCAAAAGGATTACAAATGCCCAGAATGTGAATACAAGACAAACTACAAGGCATATTTACCAATACACATGAAAACAAGACATCTGAAACAAAAAGATTATAAATGTTTAGAATGTGAATACAAGACAAACAACAAGTCGTATTTAGAGGCGCACATAAAGACAAAACATTTAAAACAAATGGATTACAAATGCGCAGAATGTCAATACAAAACAAACTACAAGTCGCAATTAGAGATACACAAAAAGCAAAAACATTTGAAGCAAATTGAGTATCAATGCCCAGAATGTGAATACAAGACAAACTACAAGTCATATTTACCAGTACACATAAAAATAAAACATCTGAAGCAAAACTATTATCCATGCTCAGAATGTGAATACAAGACGAACAAGAAATCGCGTTTAGAGGTACACATAAAGACGATACATTTGAAACAAATGGATTACAAATGCGCAGAATGTGAATACAAGACAAACTACAAGTGGTATTTAGAGGCACACATAAAGACCAAACATTTGAAACAAATGGATTATAAATGCGCGGAATGTGAATTCAAGACAAACAATAAGTCATATTTGCAAGTACACATAAAGACAAAACATCTTAAAGTGTGCGATTAA
- Protein Sequence
- MYKCEICSRRYKTRESLKAHVKKIHADNEGRDVKKHSRCDDFKANIKNMKERSPRSHAGGNLKSLPQIKHLNRLKYKCANCEFKTYYKTYLDMHMKMKHLMMKADYKSVECEYQTNYKLSSEIHIKRKHLKQNYKCAECEYQTCRKSHLEAHIKTIHLKVSDYKCAECEYRTNYKSNLEVHIKIKHLKQHDYKCTECEYKTCRKSILQVHINRKHLKQKDYKCVDCEYKTYSKSHLEVHMKTIHLKIRDYKCAECQHTTYLKSHLEAHIKTKHLKVRDYKCAECEYRTNYKSYLRVHMKRKHVKQDYKCSECEYKTNNKSYLEAHIKTKHLKQMDYKCAECEYQTNYKYHLQVHIKTKHLSQKDYKCPECEYKTNYKAYLPIHMKTRHLKQKDYKCLECEYKTNNKSYLEAHIKTKHLKQMDYKCAECQYKTNYKSQLEIHKKQKHLKQIEYQCPECEYKTNYKSYLPVHIKIKHLKQNYYPCSECEYKTNKKSRLEVHIKTIHLKQMDYKCAECEYKTNYKWYLEAHIKTKHLKQMDYKCAECEFKTNNKSYLQVHIKTKHLKVCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -