Mmel133250.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001390.1:113879-115783[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0012 0.14 16.1 1.0 1 23 5 28 5 28 0.96 2 19 0.14 17 9.6 6.5 1 23 95 118 95 118 0.97 3 19 0.0002 0.023 18.6 1.6 1 23 145 168 145 168 0.98 4 19 0.034 4 11.5 1.4 1 23 174 197 174 197 0.98 5 19 0.0011 0.12 16.3 2.3 1 23 203 226 203 226 0.98 6 19 0.00014 0.017 19.0 1.3 1 23 232 255 232 255 0.98 7 19 0.00095 0.11 16.4 1.9 1 23 261 284 261 284 0.98 8 19 0.0054 0.63 14.1 0.7 1 23 290 313 290 313 0.98 9 19 0.029 3.4 11.8 1.5 1 23 319 342 319 342 0.97 10 19 0.0011 0.13 16.2 2.1 1 23 348 371 348 371 0.98 11 19 0.00046 0.054 17.4 3.3 1 23 377 400 377 400 0.98 12 19 0.00022 0.026 18.4 1.0 1 23 406 429 406 429 0.96 13 19 0.00047 0.055 17.4 0.6 1 23 435 458 435 458 0.98 14 19 0.015 1.8 12.6 2.8 1 23 464 487 464 487 0.96 15 19 0.0082 0.95 13.5 3.8 1 23 493 516 493 516 0.98 16 19 0.0016 0.18 15.7 0.9 1 23 522 545 522 545 0.98 17 19 0.13 15 9.7 0.3 1 23 551 574 551 574 0.92 18 19 0.00015 0.017 19.0 0.8 1 23 580 603 580 603 0.98 19 19 0.0034 0.4 14.7 1.3 1 23 609 632 609 632 0.97
Sequence Information
- Coding Sequence
- ATGGTGAAAATGTATAGGTGTGGAATCTGTCACAGAAGATACAAGGCGAAGGCATCTCTCAAGGCGCACGTGGAAAAAATTCACGTTGACAATGAAGGAGGAGATGTCGAGAAACATTCTAGGTGTGACAATTTCAAAGCTAATACTAGGAATATGAAAGAGAGATCTCCACATTCACATGTTGGTGGAAGACAATGTCAATGCTCGAAATGCAAATTTCAAGCAAAGAAAAAATATCACTTAAAGTCACGTATAAAAATAAGACAACTGAACACAGGAAAATATAAGTGCACACATTGCGAGTTTAAGACATATTACAGGTCTTATTTAGAAACACATACGAAAATGAAACATCTCATGGAAATTGCTTATGAATGGTGGGAGTGTGAATTCAAGACAAGCTTCAAGTCAAATTTAGGAAGACAATATAATTATGAATGCGGAGAGTGTGAGTACAAAACAAACAACAAGTATAATTTAGAGTATCACATGAAGACAAAACATCTTAAAATAAGCGATTATAAATGCGCAGAGTGTAGATACCTAACAAACAACCTGTATTATTTAGAAAGTCACATAAAGACAAAGCATCTTAGAATAAGCGATTATAAATGCGCAGAGTGTAAATACCAAACAAGCAACCGGTATTATTTAGAAAGTCACATAAAGACAAAGCATCTTAAAATAGGCAATTATAAATGCCCAGAATGTGAATACGAAACAAGCAACCAGTTTTATTTAAAGAGTCACATACAGACAAGGCATCTTAAAATAAGCGTTTATAAATGCGCAGAATGTGAATACAAGACAAACAGCAAGTATAATTTTGAGAAACACATAGAAACAAAACATCTGAAACAAAAGAATTATAAATGCGCAGAATGCGAATACAAGGCACGCGACAGCTCACGTTTAAAAGCACACGTGAAAACGAAACATCTTAAACTATATAATTATGAATGCGGAGAGTGTGAATACAAAACAAACAACAGGTATAATTTAGAATTTCACATGAAGTCAAAGCATCTTAAAATAAGAGATTATAAATGTGCAGAGTGTGAATACAAGGCAAGCCACAAGTCAAAGTTATTAAAACACATAAAGACAATACATCTTAAAGAATACGATTACAAATGCGCAGAGTGTGAGTACAAGACAAACCACAGGTCAGAGTTAGTAAAGCACATGAAGACAAAGCATCTTAAAATAACCGATTATAAATGCACAGAATGTGAATACAAGACAAACAACAGGAATAATTTAGAGAAACACATCAAGGCGGTACATCTTAAAATAAGGGATTATAAATGTGCAGAATGTAATTACAAAGCAAGCTTCAAGTCAGGTTTAGAAAAACACATAAAGACAATACATCTTAAAGTAGCTGATTATAAATGTGCAGAGTGTGAATACAAGACAAACCATAAACCAAGTTTACATAGACACATAAAGGCAATACATCGTACAACAAAAGATTATAAATGTGCACACTGTGAATACAAGACAAACAAGAAGAGAAGTTTAGAAATACACATAAAGACAAAGCATCTAAAAAAAAGCGATTATAAATGCGCAGAGTGCGAATTCAAAACGAACTATAAGTCAAGTTTAGAAATGCACATAAAGACAATACATCTTAAGATAAGGGATTATAAGTGCGTAGAGTGTGAATACAACACAAACAGGAAGACAAGGTTAGCAAAACACGTAGAGGCAATACATCTTACAATCAAAGATTATAAATGTACAGAGTGTGGATACATGACAAATTACAAGTCAGTGTTAGTGAAACACATAAAAACAGAACATCTTAAAGAACACGATTATAAATGCGCAGAGTGTGAGTACAAGACAAACTACACGTCTAGTTTAAAAAACCACATTAGGGCAAAACATCTAAAGTAA
- Protein Sequence
- MVKMYRCGICHRRYKAKASLKAHVEKIHVDNEGGDVEKHSRCDNFKANTRNMKERSPHSHVGGRQCQCSKCKFQAKKKYHLKSRIKIRQLNTGKYKCTHCEFKTYYRSYLETHTKMKHLMEIAYEWWECEFKTSFKSNLGRQYNYECGECEYKTNNKYNLEYHMKTKHLKISDYKCAECRYLTNNLYYLESHIKTKHLRISDYKCAECKYQTSNRYYLESHIKTKHLKIGNYKCPECEYETSNQFYLKSHIQTRHLKISVYKCAECEYKTNSKYNFEKHIETKHLKQKNYKCAECEYKARDSSRLKAHVKTKHLKLYNYECGECEYKTNNRYNLEFHMKSKHLKIRDYKCAECEYKASHKSKLLKHIKTIHLKEYDYKCAECEYKTNHRSELVKHMKTKHLKITDYKCTECEYKTNNRNNLEKHIKAVHLKIRDYKCAECNYKASFKSGLEKHIKTIHLKVADYKCAECEYKTNHKPSLHRHIKAIHRTTKDYKCAHCEYKTNKKRSLEIHIKTKHLKKSDYKCAECEFKTNYKSSLEMHIKTIHLKIRDYKCVECEYNTNRKTRLAKHVEAIHLTIKDYKCTECGYMTNYKSVLVKHIKTEHLKEHDYKCAECEYKTNYTSSLKNHIRAKHLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -