Mmel056351.2
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000473.1:56531-58756[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.7 3.1e+02 5.6 5.5 1 23 13 35 13 35 0.98 2 23 0.00029 0.033 18.1 0.7 1 23 41 64 41 64 0.96 3 23 0.3 35 8.6 2.9 1 23 130 153 130 153 0.97 4 23 0.15 17 9.5 1.6 1 23 159 182 159 182 0.95 5 23 0.0093 1.1 13.3 2.9 1 23 188 211 188 211 0.98 6 23 0.12 14 9.8 0.9 1 23 217 240 217 240 0.98 7 23 0.014 1.6 12.8 0.8 1 23 246 269 246 269 0.98 8 23 0.019 2.2 12.3 0.9 1 23 275 298 275 298 0.96 9 23 0.00027 0.032 18.1 1.7 1 23 304 327 304 327 0.98 10 23 0.45 52 8.0 3.8 1 23 333 356 333 356 0.98 11 23 0.00082 0.096 16.6 1.3 1 23 362 385 362 385 0.96 12 23 0.0016 0.18 15.7 1.7 1 23 391 414 391 414 0.98 13 23 0.12 14 9.8 0.9 1 23 420 443 420 443 0.98 14 23 0.00081 0.095 16.6 1.5 1 23 449 472 449 472 0.98 15 23 0.0058 0.67 14.0 1.0 1 23 478 501 478 501 0.96 16 23 0.0077 0.9 13.6 3.6 1 23 507 530 507 530 0.98 17 23 0.0021 0.24 15.3 1.5 1 23 536 559 536 559 0.98 18 23 0.12 14 9.8 0.9 1 23 565 588 565 588 0.98 19 23 0.00081 0.095 16.6 1.5 1 23 594 617 594 617 0.98 20 23 0.0058 0.67 14.0 1.0 1 23 623 646 623 646 0.96 21 23 0.0077 0.9 13.6 3.6 1 23 652 675 652 675 0.98 22 23 0.0021 0.24 15.3 1.5 1 23 681 704 681 704 0.98 23 23 0.0034 0.39 14.7 1.3 1 23 710 733 710 733 0.98
Sequence Information
- Coding Sequence
- ATGAGAAGCAAAGTCAAAAGATGGAAGCTTGGAATGTACAAATGTACGCAATGCAAGTTCAAGACAATGTACAACGCCGACTTCAGGCACCACACTAACGAGCATTACAAGGTGAAAATGTACAAATGTGGAATTTGTGGCCGAAGATATAATGGGAAGAAATCTCTCAAGACACACGTGGAAAAAATCCATATTAACAATGAAGAAAGAGATATCCAAAAATATTCTGCGTGTGACTATTCAAAAGCTAATAAAAATACAAAAGAGAGGTCTACACATTCACAAGATGGTGAAAAACAATACCAATGGACGAAATGCAAGTCCCAAACAAGGCACAAATGTCACTTAAAATCACTTATAAAAACAAAAGATTTGAACAGAGGCAAATATAAGTGCGTAAATTGCGAGTTTAAGACGTATTACAGGACTTACTTAGAAAGGCACACGAAAATATCCCATCTCATGGAAAGTAATCATAAATGCGCAGAGTGTGAATTTAAGACAAACTACAAGCCAAGTTTAGTAAGACACATAAAGGCAAAACATTTGAAATCGAGGGATTATAAATGCATGCAATGTGAATATCAAACGAATAGGAAGTCATATTTGAATATGCACATAAAGTCAAAACATCTTAAATTATGCGATTATAAATGCATGGAGTGTGAATACCAGACGAACATCAAAGCATATTTGGAAACACACATAAAGTCAAAACATCTTAAATTATACGAATATAAATGCATGGAGTGTGAATACCAGACGAACTACAAGGCAGAATTGGAAACACACATACAATCAAAACATCTTAAATTACACGAGTATAAATGCATGGAGTGTGAATACCAGACGAACAGAAAATTTGCTTTGGAAACACACATAAAGGCAAGACATCTTAAATTACACGATTATAAATGCATGGAATGTGAATACAAGGCAAATCGCAAGTCGCAGTTAGAAAGACACATAAAGACAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACTGCAAGTCAAATTTGGAAACACACATAAAGTCAAAACATCTCAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAGCAACAAGACAAATTTAGAAAAACACATAAAGGCAAAACATCTTAAATTACGCGATTATAAATGCATGGATTGTGAATACCAGACGAACAACAAGACTGATTTAGAAAAACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACATCAAAGCATATTTGGAAACACACATAAAGTCGAAACATCTTAAATTATACGATTATAAATGCGTAGAGTGTAATTACCGGACCAACAAAAAGGCTAATTTGGAAACACACATAAAGTCTAAACATCTTAAATTACACGATTATAAATGCATGGTGTGTGAATACCAGACGAACAACAAGACAGATTTAGAAAAACACATAAAGGCAAAACATCTTAAATTACGCGATTATAAATGCATGGAGTGTGAACATCAAACGAATAGGAAGTCAGATTTGAAAATGCACATAAAGTCAAAACATCTTAACTTACATGATTATAAATGCATGGAGTGTGAATACCAGACGAACACCAAGGCATATTTGGAAAGACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACATCAAAGCATATTTGGAAACACACATAAAGTCGAAACATCTTAAATTATACGATTATAAATGCGTAGAGTGTAATTACCGGACCAACAAAAAGGCTAATTTGGAAACACACATAAAGTCTAAACATCTTAAATTACACGATTATAAATGCATGGTGTGTGAATACCAGACGAACAACAAGACAGATTTAGAAAAACACATAAAGGCAAAACATCTTAAATTACGCGATTATAAATGCATGGAGTGTGAACATCAAACGAATAGGAAGTCAGATTTGAAAATGCACATAAAGTCAAAACATCTTAACTTACATGATTATAAATGCATGGAGTGTGAATACCAGACGAACACCAAGGCATATTTGGAAAGACACATAAAGTCAAAACATCTTAAATTACACGACTATAAATGCATGGAGTGTGAATACCAGACGAACATGAAGGCAAATTTGGAAAGACACATAAAGAGAAAACATCTTAAACCTGTTGTCTCACAAACGTGA
- Protein Sequence
- MRSKVKRWKLGMYKCTQCKFKTMYNADFRHHTNEHYKVKMYKCGICGRRYNGKKSLKTHVEKIHINNEERDIQKYSACDYSKANKNTKERSTHSQDGEKQYQWTKCKSQTRHKCHLKSLIKTKDLNRGKYKCVNCEFKTYYRTYLERHTKISHLMESNHKCAECEFKTNYKPSLVRHIKAKHLKSRDYKCMQCEYQTNRKSYLNMHIKSKHLKLCDYKCMECEYQTNIKAYLETHIKSKHLKLYEYKCMECEYQTNYKAELETHIQSKHLKLHEYKCMECEYQTNRKFALETHIKARHLKLHDYKCMECEYKANRKSQLERHIKTKHLKLHDYKCMECEYQTNCKSNLETHIKSKHLKLHDYKCMECEYQTSNKTNLEKHIKAKHLKLRDYKCMDCEYQTNNKTDLEKHIKSKHLKLHDYKCMECEYQTNIKAYLETHIKSKHLKLYDYKCVECNYRTNKKANLETHIKSKHLKLHDYKCMVCEYQTNNKTDLEKHIKAKHLKLRDYKCMECEHQTNRKSDLKMHIKSKHLNLHDYKCMECEYQTNTKAYLERHIKSKHLKLHDYKCMECEYQTNIKAYLETHIKSKHLKLYDYKCVECNYRTNKKANLETHIKSKHLKLHDYKCMVCEYQTNNKTDLEKHIKAKHLKLRDYKCMECEHQTNRKSDLKMHIKSKHLNLHDYKCMECEYQTNTKAYLERHIKSKHLKLHDYKCMECEYQTNMKANLERHIKRKHLKPVVSQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00990207;
- 90% Identity
- iTF_00990067;
- 80% Identity
- -