Mmel133247.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001390.1:93330-95108[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0015 0.17 15.8 2.9 1 23 5 28 5 28 0.96 2 19 0.2 23 9.1 6.2 2 21 66 85 65 86 0.95 3 19 0.32 38 8.4 5.0 1 23 94 117 94 117 0.97 4 19 0.095 11 10.1 1.1 2 23 124 146 123 146 0.96 5 19 0.0022 0.26 15.3 2.7 1 23 152 175 152 175 0.98 6 19 9.5e-05 0.011 19.6 1.3 1 23 181 204 181 204 0.98 7 19 0.045 5.2 11.2 0.7 3 23 210 233 209 233 0.95 8 19 0.00042 0.049 17.5 2.1 1 23 238 261 238 261 0.98 9 19 0.00093 0.11 16.4 0.9 1 23 266 289 266 289 0.98 10 19 0.0037 0.43 14.6 1.9 1 23 295 318 295 318 0.98 11 19 0.0051 0.6 14.1 3.2 1 23 324 347 324 347 0.98 12 19 0.00082 0.096 16.6 2.8 1 23 353 376 353 376 0.98 13 19 0.0029 0.34 14.9 0.6 1 23 382 405 382 405 0.96 14 19 0.00027 0.032 18.1 1.7 1 23 411 434 411 434 0.96 15 19 8.6e-05 0.01 19.7 0.8 1 23 440 463 440 463 0.98 16 19 0.0024 0.28 15.1 1.7 1 23 469 492 469 492 0.98 17 19 0.0044 0.51 14.3 3.3 1 23 498 521 498 521 0.98 18 19 0.0038 0.44 14.5 1.7 1 23 527 550 527 550 0.98 19 19 0.0023 0.27 15.2 0.5 1 23 556 579 556 579 0.96
Sequence Information
- Coding Sequence
- ATGGTGAAAATGTACAAGTGTGAAATCTGCCACAGAAGATACAAGGCGAAGACATCTCTCAAGGCGCACGTGGAAAAGTATCATGTTGACAATCAAGGAGATGTCGAGAAACATTCTAGATGTGACTATTTCAAAGCTAATACTAGGAATATGAAAGAGAGATCTCCACATTCACATGTTGGTGGAAAACAAAGTCAATGCTCGAAATGCAATTTTCAAACAAAGAGAAAATGTCACTTAAAGTCGCATATGAAAATAAAACAACTGAACAGAGGCAAATATAAGTGCGCACATTGCGAGTTTAAGACATATTACAGGTCTTATTTAGAAATGCATACGAAAATGAAACATCTCATGGAAATTGATTCTAAATGCAGGGAGTGTGAATTCAAGCCAAGCTACAAGAATAATTTAGAAAGACACATAAAAACGGAGCATTTGAAACAAAAGAATTATAAATGCGCCGAATGTGAATACCAGACAAGTAACAGCTCATGTTTAAAAGCACACGTGAAAACGAAACATCTTAAGGAATATAATTATAAATGCGGTGAGTGTGGGTACAAGACAAATCGGAAATCACGTTTGGAAATACACATAAAGACAAAGCATCTTAAAATAAGCGATTGTAAAGGCGCAGATTGTGAGTACAAAACAAACAACAAGTATAGGTTTGAGAAACACATGAATACAGTACATCTTAAAATGAGATATACATGTGCAGAATGTGAATACAAGGCGAGCCACAAGTCTGAGTTAGTAAAACACATGAAGACAAAGCATCTTAAAGTAAGTTATAAATGTGCAGAATGTGAATACGCGACAACTAACAGATCACGTTTAAAAGCACACGTGAAAACGAAACATCTTAAAGAATATAATTATAAATGCGCAGAATGTAAATATCAGACAAACAAGCAATATTATTTAGAGATTCACATAAAGACAAAGCATCTTAAAATAAACGATTATAAGTGCGCAGAATGTGAACACAAGACAAACAACAAGTATAGTTTCGAGAAACACCTAAATACAGTACATCTTAAAATAAGAGATTATATATGTACCGAATGTGAATACAGGGCAAGCCACAAGTATGAGTTATTAAAACACATGAAGACAAAGCATCTTAAAATAAGTTATTATAAATGTGCAGAATGTGAATACAAGACAAACAACAAGGGCAGTTTCCAGAATCACATCAAGGCAGTGCATCTTAAAATAAGAGATTATAAATGTGCTGATTGTGAATACAAGACAAGCAACAAGAATCATTTAGAGAAACACATCAAGGCAGTTCATCTTAAAATAAGGGATTATGAATGTATGGAGTGTGAATTCAAGACAAGTCGCAAATCAGATTTAGAAAAACACATAAAGACAATACATCTTAAAGTAGCCGATTATAAATGCGTAGAGTGTGAATACAAGACAAACCATAAGCCAAGTTTAGAGAGACACGTAAAGACAATACATCTTACAATAAAAGACTATAAATGCGCACACTGTGAATACAAGACAAACTACAAGTCAAATTTAGATAATCACGTAAAGACACTACATCTTAAATTGACCGATTATAAATGCCCAGAGTGTGAATTCAAGACACACTATAAGTCAAGTTTAGAAGGTCACATAAAGACAATACATCTTAAGATAAGGGCTTATAAGTGCGTAGAATGTGAATACAACACAAACACGAAGAAAAGTTTAGCAAAACACATTAAGGCAATACATCTTACAATAAGAGATTATAAATGTTGTAACGAACCCCGTTAG
- Protein Sequence
- MVKMYKCEICHRRYKAKTSLKAHVEKYHVDNQGDVEKHSRCDYFKANTRNMKERSPHSHVGGKQSQCSKCNFQTKRKCHLKSHMKIKQLNRGKYKCAHCEFKTYYRSYLEMHTKMKHLMEIDSKCRECEFKPSYKNNLERHIKTEHLKQKNYKCAECEYQTSNSSCLKAHVKTKHLKEYNYKCGECGYKTNRKSRLEIHIKTKHLKISDCKGADCEYKTNNKYRFEKHMNTVHLKMRYTCAECEYKASHKSELVKHMKTKHLKVSYKCAECEYATTNRSRLKAHVKTKHLKEYNYKCAECKYQTNKQYYLEIHIKTKHLKINDYKCAECEHKTNNKYSFEKHLNTVHLKIRDYICTECEYRASHKYELLKHMKTKHLKISYYKCAECEYKTNNKGSFQNHIKAVHLKIRDYKCADCEYKTSNKNHLEKHIKAVHLKIRDYECMECEFKTSRKSDLEKHIKTIHLKVADYKCVECEYKTNHKPSLERHVKTIHLTIKDYKCAHCEYKTNYKSNLDNHVKTLHLKLTDYKCPECEFKTHYKSSLEGHIKTIHLKIRAYKCVECEYNTNTKKSLAKHIKAIHLTIRDYKCCNEPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -