Mmel196575.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melolontha melolontha
Gene Symbol
-
Assembly
GCA_935421255.1
Location
CAKXYX010005973.1:418085-419998[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 3.1 3.6e+02 5.4 8.2 1 23 2 24 2 24 0.99
2 20 0.00027 0.032 18.1 1.1 1 23 30 53 30 53 0.96
3 20 0.23 26 8.9 2.4 1 23 120 143 120 143 0.98
4 20 0.012 1.4 13.0 3.6 1 23 150 173 150 173 0.98
5 20 0.00059 0.069 17.1 1.2 1 23 179 202 179 202 0.98
6 20 0.00057 0.066 17.1 1.2 1 23 208 231 208 231 0.98
7 20 0.0063 0.74 13.8 0.9 1 23 237 260 237 260 0.97
8 20 0.0063 0.74 13.8 0.9 1 23 266 289 266 289 0.97
9 20 0.003 0.35 14.8 1.0 1 23 295 318 295 318 0.98
10 20 0.0031 0.36 14.8 0.8 1 23 324 347 324 347 0.98
11 20 0.0031 0.36 14.8 0.8 1 23 353 376 353 376 0.98
12 20 0.00027 0.031 18.2 1.4 1 23 382 405 382 405 0.98
13 20 0.00061 0.072 17.0 1.8 1 23 411 434 411 434 0.98
14 20 0.012 1.4 12.9 0.9 1 23 440 463 440 463 0.97
15 20 0.012 1.4 12.9 0.9 1 23 469 492 469 492 0.97
16 20 0.21 25 9.0 3.8 1 23 498 521 498 521 0.98
17 20 0.011 1.2 13.1 0.8 1 23 527 550 527 550 0.97
18 20 0.0024 0.28 15.1 1.3 1 23 556 579 556 579 0.98
19 20 0.00028 0.033 18.1 1.3 1 23 585 608 585 608 0.98
20 20 0.00057 0.066 17.1 1.2 1 23 614 637 614 637 0.98

Sequence Information

Coding Sequence
ATGTACAAATGCACGCAATGCAAGTTCAGAACAGTGTACCACGCCGACTTCAGACACCACACTAACAAGCATTACGAGATGAAAATGTACAAATGTGGAATTTGTGGCAGAAGATACAAGACGAGGGGATTTCTGAAGATGCACGTAGAAAAAAATCATGCCGAGAATGAAGGCAGAGAGTTCGAAAAATACTCTAAATGTGACTATTTCAAAGCTAATATTAAAAATATAAAAGGAAAATCTCTACATTCACATGATGGTAAAAAACATTGTCAATCCTCAAAATACGAATTTCAAAATAGAGACGAAAGTCACTTAAAATCACTTCTAAAAATAAAACATCTGAACAGAGGCAAATATAAGTGCGCAAATTGCGAGTTTAAGACATATTACAGGACTTATTTAGAAATGCATATCAAAATGAAACATCTCACGATGGAAGCTGATTATAAATGCATGAAGTGCGAATTCAAAACAAACTACAAGTCAGCCTTGGAAAGACACACAAAAACAAAACATCTGAAACAAAATGAATATAAATGTGCAGAGTGTGAATACCAGACAAACTACAAGTCAAACTTAGAACTGCATATAAAAACAAAACATCTGAAACAAAATGATTACAAATGCGCAGAGTGTGAATACCAGACAAACAACAAGTCAAACTTAAAAGTGCACGTAAAATCAAAACATCTGAAACAAAATGATTATAAATGCGCAGAATGTGAATACCAGACAAACTACAAGTCAAGTTTAGAAGTGCACGTAAAATCAAAACATCTGAAACAAAATGATTATAAATGCGCAGAATGTGAATACCAGACAAACTACAAGTCAAGCTTAGAAGTGCACGTAAAATCAAAACATCTGAAACAAAATAATTATAAATGCGCAGAGTGTGAATACCAGACAAACAACACGTCAAACTTAAAAGTGCACGTAAAATCAAAACATCTGAAACAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACGTCAAGTCAAATTTAAAAGTGCACGTAAAATCAAAACATCTGAAACAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACGTCAAGTCAAACTTAAAAGTGCACGTAAAATCAAAACATCTGAAACAAAATGATTACAAATGCGCAGAGTGTGAATACCGGACAAACAACAAGTCAAACTTAAAAGTGCACGTAAAATCAAAACATCTGAAACAAAAGGATTATAAATGCGCAGAGTGTAAATACCAGACATACTACAAGTCAAACTTAGAAGTGCACATAAAAACAAAACATCTGAAACAATGTGATTATAAATGCGCAGAATGTGAATACCAGACAAACTTCAAGTCAAGCTTAGAAGTGCACGTAAAATCAAAACATCTGAAACAAAATGTTTATAAATGCGCAGAATGTGAATACCAGACAAACTTCAAGTCAAGCTTAGAAGTGCACGTAAAATCAAAACATCTGAAACAAAATGTTTATAAATGCGCAGAATGTGAATACCAGACAAACTACAAGTCATGCTTTGAACTGCACATAAAATCAAAACATCTGAAACAAAATGATTATAAATGCGCAGAATGTGAATACCAGTCAAACTACAAGTCAAGCTTAGAAGTGCACGTAAAATCAAAACATCTGAAACAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACATGAAGTCAAACTTAAAAGTGCATTTAAAATCAAAACATCTGAAACAAAAGGATTATAAATGCGCAGAGTGTGAATACCGGACAAACTACAAGTCAAACTTAGAACTGCATATAAAAACAAAACATCTGAAACAAAATGATTACAAATGCGCAGAGTGTGAATACCAGACAAACAACAAGTCAAACTTAAAAGTGCACGTAAAATCAAAACATTAA
Protein Sequence
MYKCTQCKFRTVYHADFRHHTNKHYEMKMYKCGICGRRYKTRGFLKMHVEKNHAENEGREFEKYSKCDYFKANIKNIKGKSLHSHDGKKHCQSSKYEFQNRDESHLKSLLKIKHLNRGKYKCANCEFKTYYRTYLEMHIKMKHLTMEADYKCMKCEFKTNYKSALERHTKTKHLKQNEYKCAECEYQTNYKSNLELHIKTKHLKQNDYKCAECEYQTNNKSNLKVHVKSKHLKQNDYKCAECEYQTNYKSSLEVHVKSKHLKQNDYKCAECEYQTNYKSSLEVHVKSKHLKQNNYKCAECEYQTNNTSNLKVHVKSKHLKQNDYKCAECEYQTNVKSNLKVHVKSKHLKQNDYKCAECEYQTNVKSNLKVHVKSKHLKQNDYKCAECEYRTNNKSNLKVHVKSKHLKQKDYKCAECKYQTYYKSNLEVHIKTKHLKQCDYKCAECEYQTNFKSSLEVHVKSKHLKQNVYKCAECEYQTNFKSSLEVHVKSKHLKQNVYKCAECEYQTNYKSCFELHIKSKHLKQNDYKCAECEYQSNYKSSLEVHVKSKHLKQNDYKCAECEYQTNMKSNLKVHLKSKHLKQKDYKCAECEYRTNYKSNLELHIKTKHLKQNDYKCAECEYQTNNKSNLKVHVKSKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00989856;
90% Identity
-
80% Identity
-