Mmel064162.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000534.1:923646-926069[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00075 0.087 16.7 0.3 1 23 78 101 78 101 0.96 2 22 0.25 29 8.8 5.3 1 23 161 184 161 184 0.97 3 22 0.069 8.1 10.6 5.6 1 23 190 213 190 214 0.97 4 22 8.3e-05 0.0097 19.7 0.7 1 23 219 242 219 242 0.98 5 22 0.00019 0.022 18.7 0.2 1 23 277 300 277 300 0.98 6 22 0.076 8.9 10.4 5.3 1 23 306 329 306 329 0.98 7 22 0.11 13 9.9 1.6 1 23 335 358 335 358 0.98 8 22 0.028 3.3 11.8 4.8 1 23 364 387 364 387 0.98 9 22 0.0065 0.76 13.8 3.5 1 23 393 416 393 416 0.96 10 22 0.0052 0.6 14.1 2.7 1 23 422 445 422 445 0.98 11 22 0.014 1.7 12.7 1.7 1 23 451 474 451 474 0.95 12 22 2.4e-05 0.0028 21.5 4.2 1 23 480 503 480 503 0.98 13 22 0.0039 0.45 14.5 1.1 1 23 509 532 509 532 0.98 14 22 0.0027 0.31 15.0 1.6 3 23 545 566 543 566 0.96 15 22 0.0011 0.12 16.3 1.0 1 23 572 595 572 595 0.98 16 22 0.0026 0.3 15.0 2.7 1 23 601 624 601 624 0.98 17 22 8.1e-05 0.0095 19.8 1.3 1 23 630 653 630 653 0.98 18 22 0.48 56 7.9 5.2 1 23 659 682 659 683 0.94 19 22 5.6 6.5e+02 4.5 5.1 1 23 688 711 688 711 0.93 20 22 0.00038 0.044 17.7 0.9 1 23 717 740 717 740 0.98 21 22 0.00038 0.044 17.7 0.9 1 23 746 769 746 769 0.98 22 22 0.00036 0.042 17.8 1.9 1 23 775 798 775 798 0.98
Sequence Information
- Coding Sequence
- ATGTTATTGTATTTGAAGAGAGTTGGAATTGAATTCGCTTTCATTTGTTTTAGATACAGCGTACCTTCTATACCGGACTTCTTCGAGGTAGAAGTAAGAAGGCGTTCATCTCTAAGAGGCAAGGTTAAAATACGGAAGCGTAAAATATACAAATGTACACGATGCAAGTTCACAACAATGTACAACGCCGACTTCAGACACCATTCTAATGATCATTACGGGGTGAAAATGTACAAATGTGGAATTTGTGATAGAAGATACAAGGCGAAGAAATCTCTCGAGGCGCATGTGGAAAAAATTCATGCTAACAATGAAGGAATAGATGTCCAAAAATACTCTACGCGTGACTACTTCAAAGCCAGTATTAAAAATATAAAAGAGAGGTATCCACACTCACATGATTGTGGAAAACGATGTCAACGCTCGAAGTGCGGACTTCAAAAGGGACGCTTAAAAATGAAACTTTTAAACAGAAGAAAATATAAGTGCGCACATTGCGAGTTTAAAACATATTACAGAACTTATTTGAGAATGCATATGAAAATAAAACATCTCATAGAATGTAATTATAAATGCATGGAGTGTGAATTCAAGGCAAATCACAAGTCACACTTAGAAGGACACATGAAGACAATACATCATAAAGAACACGTTTATAAATGCCCAGAGTGTGAATACAAAACAAACCGCAAGTTAAATTTAGAAAATCATATAAAGACAATACATTTTAAAGTAACCGATTATAAATGCGGAAAGCGTGAATACAAGACAAACTATATGTCAAGTTTTAAAAAACACGTAAAGACAAAACATCTTCAAGTAATCGTTTATAAATGCCCAGAATGTGAATACAAGGCAAGCTACCAATCTGGTTTAGAAAATCACATAAAGACAATTCATCTTAAAGCAAGAGATTATAAATGCGCAGAGTGTGAATACATGACAAATTACAAATGCCACTTAGTAACACACATAAAAACGAAACATCTTAAAGAACACGATTATAAATGCGCAGAATGTGAATACAAGACGAACTGCAAGCCAAATTTAGAAAATCACATAAAGACAATACATCTTAAACTAACAGATTATAAATGCGCAGAGTGTGAATACAGAACAAATAACAAGTGCCATTTAGTAGAACACATAAAAACGAAACATCTTAAAGAACACGATTATAAATGCGCAGAGTGTGAATACAAGACAAATACGAAGTCTCATTTTAAAGAACACATAAAGGCAAAACATCTTAAAATAAGCGATTATAAATGCATGGGGTGTAACTTCAAGACATATCGAAAGTCATATTTAGATAGACACATAAAGAGAGTACATCTTAAAGTAACTGATTATAAATGTGCAAAGTGTGAATACAAGACATTTATGAAGTCTAATTTGAGACAACACTTAAAGGCAGTACATCTTAAAGAACACGATTATAAATGCACAGAGTGTGACTACAAGACAAATAACAAGTCACATTTAAAAGCACACATAAAGACAAGACATCTCAAAGAATACGATTATAAATGTGCAGAGTGTGAATACAAGACAAACCACAAGCCAGCATTAGAAAAACATGTAAAAACAATACATCTTAAACTAACCAAACCAAACTGCGTAGATGTAAATTGTTTGTTTTGTGAATACAAGACAAGCTATAAGTCAAATTTAGAAAAACATATAAAGACAAAACATCTTAAGGTAACCGATTATAGATGTGCAGAGTGTGAATACAAGACAAACTACAAGTCTAGTTTAGAAAATCACATAAAGAAAATACATCTTAAAGTAACCGATTATAAATGTGTAGAGTGTGAATACAAGACAAACTACAAGTATAGTCTAGAGAAACACTTAAAGACAAGACATCTTAAAGTAACCGATTATAAATGCGCAGAGTGTGAATACGAGACAAACTACAAGTCTAATTTAAAGAAGCACATAAAGACAGAACATCTTAAAGAACATGATTATAAATGCATAGGTTGTGAATACAAGACAAATAAGAAGTCTCATTTGAGACAACACATAAAGGCCAAACATCATAAAATAAGAGATCATAAATGTATGGAGTGTGAATTCAAGACGAGTTGCAAGTCAAATTTAGAAAAACACATAACGGGAAAACATCTGAAACAACGTGATTATAAATGCGTAGAGTGTGAATACAAGACAAATCGTAATTCAAGTTTAAAAATACACATAAAGTCAATACATCTGAAACAATGTGATTATAAATGCGTAGAGTGTGAATACAAGACAAATCGTAATTCAAGTTTAAAAATACACATAAAGTCAATACATCTGAAACAATGTGATTATAAATGCGCAGAGTGTGAATACAAGACAAACTACAAGTCTAGTCTAGAAAAACATATAAAGACAAGACATCTCAAAGTAACCGATTATAAATGCGCTTAG
- Protein Sequence
- MLLYLKRVGIEFAFICFRYSVPSIPDFFEVEVRRRSSLRGKVKIRKRKIYKCTRCKFTTMYNADFRHHSNDHYGVKMYKCGICDRRYKAKKSLEAHVEKIHANNEGIDVQKYSTRDYFKASIKNIKERYPHSHDCGKRCQRSKCGLQKGRLKMKLLNRRKYKCAHCEFKTYYRTYLRMHMKIKHLIECNYKCMECEFKANHKSHLEGHMKTIHHKEHVYKCPECEYKTNRKLNLENHIKTIHFKVTDYKCGKREYKTNYMSSFKKHVKTKHLQVIVYKCPECEYKASYQSGLENHIKTIHLKARDYKCAECEYMTNYKCHLVTHIKTKHLKEHDYKCAECEYKTNCKPNLENHIKTIHLKLTDYKCAECEYRTNNKCHLVEHIKTKHLKEHDYKCAECEYKTNTKSHFKEHIKAKHLKISDYKCMGCNFKTYRKSYLDRHIKRVHLKVTDYKCAKCEYKTFMKSNLRQHLKAVHLKEHDYKCTECDYKTNNKSHLKAHIKTRHLKEYDYKCAECEYKTNHKPALEKHVKTIHLKLTKPNCVDVNCLFCEYKTSYKSNLEKHIKTKHLKVTDYRCAECEYKTNYKSSLENHIKKIHLKVTDYKCVECEYKTNYKYSLEKHLKTRHLKVTDYKCAECEYETNYKSNLKKHIKTEHLKEHDYKCIGCEYKTNKKSHLRQHIKAKHHKIRDHKCMECEFKTSCKSNLEKHITGKHLKQRDYKCVECEYKTNRNSSLKIHIKSIHLKQCDYKCVECEYKTNRNSSLKIHIKSIHLKQCDYKCAECEYKTNYKSSLEKHIKTRHLKVTDYKCA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -