Mmel196864.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010005974.1:1291306-1294418[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 4.9 5.7e+02 4.7 5.3 1 23 42 64 42 64 0.97 2 29 0.0014 0.16 15.9 2.0 1 23 70 93 70 93 0.96 3 29 0.0042 0.49 14.4 2.2 1 23 159 182 159 182 0.97 4 29 0.059 6.8 10.8 2.3 1 23 188 211 188 211 0.95 5 29 0.23 26 8.9 2.5 1 23 217 240 217 240 0.98 6 29 0.0051 0.6 14.1 4.1 1 23 246 269 246 269 0.98 7 29 0.025 2.9 12.0 1.6 1 23 275 298 275 298 0.98 8 29 0.00028 0.032 18.1 0.9 1 23 304 327 304 327 0.98 9 29 0.013 1.6 12.8 1.4 1 23 333 356 333 356 0.98 10 29 0.039 4.6 11.3 2.4 1 23 362 385 362 385 0.98 11 29 0.0012 0.14 16.1 0.4 1 23 391 414 391 414 0.98 12 29 0.0017 0.2 15.6 1.9 1 23 420 443 420 443 0.98 13 29 0.068 7.9 10.6 2.7 1 23 449 472 449 472 0.97 14 29 0.066 7.7 10.6 0.9 1 23 478 501 478 501 0.96 15 29 0.00028 0.032 18.1 0.9 1 23 507 530 507 530 0.98 16 29 0.0024 0.28 15.2 2.0 1 23 536 559 536 559 0.98 17 29 0.068 7.9 10.6 2.7 1 23 608 631 608 631 0.97 18 29 0.066 7.7 10.6 0.9 1 23 637 660 637 660 0.96 19 29 0.1 12 10.0 1.7 1 23 666 689 666 689 0.98 20 29 0.038 4.4 11.4 0.7 1 23 695 718 695 718 0.96 21 29 0.0024 0.28 15.2 2.0 1 23 724 747 724 747 0.98 22 29 0.013 1.5 12.8 1.0 1 23 753 776 753 776 0.98 23 29 0.068 7.9 10.6 2.7 1 23 797 820 797 820 0.97 24 29 0.066 7.7 10.6 0.9 1 23 826 849 826 849 0.96 25 29 0.1 12 10.0 1.7 1 23 855 878 855 878 0.98 26 29 0.015 1.8 12.6 0.7 1 23 884 907 884 907 0.98 27 29 0.039 4.5 11.4 1.1 1 23 913 936 913 936 0.98 28 29 0.34 40 8.4 0.8 2 23 943 965 942 965 0.97 29 29 0.0086 1 13.4 2.4 1 23 971 994 971 994 0.98
Sequence Information
- Coding Sequence
- ATGATTAATTCGAATTCATTTAATTTCAGACACTGCGTACTTCCTACACAGAAAGTTGTCGAGGGAGAAGTAGAAAGACGTTTATTTGTAAGAAGCAAGGTCAAAAGATGGAAGCGTGGAATATACAGATGTACGCAATGCAAGTTCAAGACAATGTACAACGCCGACTTCAGGCACCACACTAACGAGCATTACAAAGTAAAAATGTACAAATGTGGAATTTGTAATCGAAGATATAAGGGGAAGAAATCTCTCAAGACGCACGTGGAAAAAACTCATATTAACAATGAAGGAAGAGATACACACAAATATTCTGCATGTAACTATTCCAAAGCTAATGAAAATGCAAAACAGAGATCTACACATTCACACATTGGTGGAAAACAATGTCAAGGCGCGAAATGCAAGTTTCAAACAGGGTACAAGTGTCACTTAAAATCGCCTATAAAAAGAAAAGATTTGAGCAGAGGCAAATATAAGTGCGCAAATTGCGGGTTTAAGACATATTACAGGACTTATTTAGAAAGGCACATGAAAATAAACCATCTCATGGAAAGTAATTATAAATGCGCAGAGTGTAAATTCGAAACCAAGTTCAAGTCAAGTTTAGCAAGACACAAAAAGGCAAAACATCTTAAATTAAACAAATATAAATGCATGGAGTGTGAATATCAGGCGAATAGGAAGACATGTTTAGAAATACACATTAAGTCAAAACATCTTAAATCCAGCGATTATAAATGCATGGAATGTGAATATCAGACGAACAACAAGACACATTTAAAAAGACACATTATGTCAAAACATCTTAAATCCAGCGATTTTAAATGCTTGGAGTGTGAATACCAGACGAACATCAAATCTAATTTAAAAATGCACATAAAGTCAAAACATCTTGAAACAAGCGATTATAAATGCGCAGATTGTGAATATGAGACGAATAGGAAGTCAAATTTGGAAATGCATATAAAGTCCAAACATCTTAAATCCAGCGATTATAAATGCATGGAATGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCCAGCGATTATAAATGCATGGAATGTGAATATCAGACGAACATCAAGGCACATTTAAAAAGACACATTATGTCAAAACATCTTGAAACAAGCGATTATAAATGCGCAGATTGTGAATATGGGGCGAATAGGAAGTCAAATTTGGAAATGCATATAAAGTCCAAACATCTTAAATCATGCGATTTTAAATGCGTGGAATGTGAATACCAGACGAACTTTAAGTCAAATTTAGAAAGACACATAAAGTCAAAACATCTTAAATCCAGCGATTATAAATGCATGGAATGTGAATATCAGACGAACATCAAGGCACATTTAAAAAGACACATAAAGTTAAAACATCTTAAATCATGCGATTTTAAATGCATGGAGTGTGAATATCAGACGAACTTCAAATCAGGTTTAGAAACACACATAAAGGCAAAACATCTTAAATCCAGCGATTACAAATGCGCAGATTGTGAATATGAGACGAATAGGAAGTCAAATTTGGAAATGCATATAAAGTCCAAACATCTTAAATCATGCGATTTTAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAAGACACATAAAGACAAAACATCTTAAATCAAACGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAATTTAGGACACATAAAGTCAAAACATCTTAAATCCAGTGATTATAAATGTGTGGAATGTGAATACCAGACGAACTACTTTAACGATTATAAATGCATGGAATGTGAATATCAGACGAACATCAAGGCACATTTAAAAAGACACATAAAGTTAAAACATCTTAAATCATGCGATTTTAAATGCATGGAGTGTGAATATCAGACGAACTTCAAATCAGGTTTAGAAACACACATAAAGGCAAAACATCTTAAATCAAGCGATTATAAATGCATGGAATGTGAATACCAGACGAACTTCAAGGCACGATTAGAAAGACACATAAAGTCAAAACATCTTAAATTATGTGATTATAAATGCGTGGAGTGTGAATATCAGACGAACTTCAAATCAGGTTTAGAAACACACATAAAGGCAAAACATCTTAAATCATGCGATTTTAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAAGACACATAAAGACAAAACATCTTAAATCAAACGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAATTTAGAAGGACACATAAAGTCAAAACATCTTAAATCCAGTGATTATAAATGTGTGGAATGTGAATACCAGACGAACTACTTTAACGATTATAAATGCATGGAATGTGAATATCAGACGAACATCAAGGCACATTTAAAAAGACACATAAAGTTAAAACATCTTAAATCATGCGATTTTAAATGCATGGAGTGTGAATATCAGACGAACTTCAAATCAGGTTTAGAAACACACATAAAGGCAAAACATCTTAAATCAAGCGATTATAAATGCATGGAATGTGAATACCAGACGAACTTCAAGGCACGATTAGAAAGACACATAAAGTCAAAACATCTTAAATTATGTGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTGGAGTCAAATTTGAAAGTACACATAAAGTCAAAACATCTTAAATCATGGGATTATAAATGCATGGACTGTGAATATCAGACCAACTTGAAGTATAGTTTGGAAGTACACATAAAGTCAAAACATCTTAAATCATGGGATAATAAATGCATGGACTGTGAATATCAGACCAACTTGAAGTATTATTTGGAAGTACACATAAAGTCAAAACATCTTAAATCATGGGATTATAAATGCATGGAGTGTGAATATCAGACGAATAGGAAGTTTAATTTGAAACTCCACATCAACTCAAAACATCTTAAATCATCACTTTTAGGAAAACACAAAGACAAAACATCTTAA
- Protein Sequence
- MINSNSFNFRHCVLPTQKVVEGEVERRLFVRSKVKRWKRGIYRCTQCKFKTMYNADFRHHTNEHYKVKMYKCGICNRRYKGKKSLKTHVEKTHINNEGRDTHKYSACNYSKANENAKQRSTHSHIGGKQCQGAKCKFQTGYKCHLKSPIKRKDLSRGKYKCANCGFKTYYRTYLERHMKINHLMESNYKCAECKFETKFKSSLARHKKAKHLKLNKYKCMECEYQANRKTCLEIHIKSKHLKSSDYKCMECEYQTNNKTHLKRHIMSKHLKSSDFKCLECEYQTNIKSNLKMHIKSKHLETSDYKCADCEYETNRKSNLEMHIKSKHLKSSDYKCMECEYQTNFKSSLEIHIKSKHLKSSDYKCMECEYQTNIKAHLKRHIMSKHLETSDYKCADCEYGANRKSNLEMHIKSKHLKSCDFKCVECEYQTNFKSNLERHIKSKHLKSSDYKCMECEYQTNIKAHLKRHIKLKHLKSCDFKCMECEYQTNFKSGLETHIKAKHLKSSDYKCADCEYETNRKSNLEMHIKSKHLKSCDFKCVECEYQTNFKSSLERHIKTKHLKSNDYKCVECEYQTNFKSNLGHIKSKHLKSSDYKCVECEYQTNYFNDYKCMECEYQTNIKAHLKRHIKLKHLKSCDFKCMECEYQTNFKSGLETHIKAKHLKSSDYKCMECEYQTNFKARLERHIKSKHLKLCDYKCVECEYQTNFKSGLETHIKAKHLKSCDFKCVECEYQTNFKSSLERHIKTKHLKSNDYKCVECEYQTNFKSNLEGHIKSKHLKSSDYKCVECEYQTNYFNDYKCMECEYQTNIKAHLKRHIKLKHLKSCDFKCMECEYQTNFKSGLETHIKAKHLKSSDYKCMECEYQTNFKARLERHIKSKHLKLCDYKCVECEYQTNLESNLKVHIKSKHLKSWDYKCMDCEYQTNLKYSLEVHIKSKHLKSWDNKCMDCEYQTNLKYYLEVHIKSKHLKSWDYKCMECEYQTNRKFNLKLHINSKHLKSSLLGKHKDKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -