Mmel077806.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000652.1:1023423-1025348[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00027 0.031 18.2 1.3 1 23 57 80 57 80 0.98 2 19 9.7 1.1e+03 3.8 0.2 11 23 94 107 90 107 0.89 3 19 0.00058 0.068 17.1 0.5 1 23 113 136 113 136 0.98 4 19 0.00039 0.045 17.6 1.5 1 23 142 165 142 165 0.98 5 19 0.00027 0.031 18.2 1.3 1 23 173 196 173 196 0.98 6 19 0.0021 0.25 15.3 3.6 1 23 202 225 202 225 0.97 7 19 0.00042 0.049 17.5 2.1 1 23 231 254 231 254 0.98 8 19 0.00034 0.04 17.8 1.5 1 23 260 283 260 283 0.98 9 19 0.0012 0.14 16.1 2.1 1 23 289 312 289 312 0.98 10 19 0.0095 1.1 13.3 1.8 1 23 318 341 318 341 0.98 11 19 7.8e-05 0.0091 19.8 3.1 1 23 347 370 347 370 0.98 12 19 0.0027 0.32 15.0 1.0 1 23 376 399 376 399 0.96 13 19 0.0056 0.65 14.0 1.7 1 23 405 428 405 428 0.98 14 19 0.0053 0.61 14.1 3.2 1 23 434 457 434 457 0.98 15 19 0.002 0.23 15.4 1.0 1 23 463 486 463 486 0.98 16 19 0.0053 0.61 14.1 3.2 1 23 492 515 492 515 0.98 17 19 0.00079 0.092 16.7 1.7 1 23 521 544 521 544 0.98 18 19 0.009 1 13.3 1.0 1 23 550 573 550 573 0.98 19 19 0.01 1.2 13.2 1.4 1 23 579 602 579 602 0.95
Sequence Information
- Coding Sequence
- ATGTATGTATTTGCTCCGTTTCACAGAAGTGCGCTCGCATTTCCCTCACACCTCAAACATCTGAAACCAAATGATTATAAATGTGCAGAGTTTGAAAACCAGACAAACTTCAAGTCAATTTTAGAAATGCACATAAAAACAATACACCTGAACCAAAGTGATTATAATTATAAATGCGCAGAGTGTGAATACCAGACGAACAATAAGTCAAACTTAAAAGTGCATGTAAAAACAAAACATTTGAAACAAAGCGATTATAAATGCGCTGAATACCAGACAAATAACAAGACAAACTTAGAAGTGCACGTAAAAACAAAACATCTTAAACAATTTGATTATAAATGCACAGAGTGTGAATACCAGGCAAACTTCAAGTCAAACTTAGAAGTGCACATAAAAACAATACATCTGAAACAATGTGATTATAAATGCACGGAGTGTGAATACCAGGCAAAGTACAAGTCAAGTTTAGAAGTACACATGAAAACAAAACATCTGAAACAAGGTGATTACAATTATAAATGCGCAGAGTGTGAATACCAGACGAACAACAAATCAAATTTAAAAGTGCACGTAAAAACAAAACATTTGAAACAAAGCGATCATAAATGCACTGAATGTAAATACCAGACAAATAACAAGTCAAACTTAGAAGTGCACGTAAAATCAAAACATCTTAAACAATATGATTATAAATGCACAGAGTGTGAATACCAGACAAACTTCAAATCAAGTTTAGAAGTGCACATGAAAACAAAACATCTGAAACAAAATGATTTCAAATGCTCAGAGTGCGAATATCAGTCAAACTACAAATCTAACTTAGAAGTGCACATAAAAACAAAACACCTGAAACAAAGTGATTATAAATGCACAGAGTGTGAATACCAGGCAAACTTCAAGTCAAGTTTAAAAGTGCACATGAAAACAAAACATCTGAAACAGAATGATTATAAATGCGCAGAGTGTGAATACCAGACGAACTTCAAGCAAAATTTAAAAGTTCACGTGAAAACAAAACACTTCAAACAAAAGGATTATAAATGCACAAAATGTGACTACCAGACAAACAACAAGTCAAACTTAAAAGTGCACGTAAAAACAAAACATCTGAATCAAAGTGATTATAAATGCGTTGAATGTAAATACCAGACAAACAACAAGTCAAGCTTAGAATTGCATATAAAAGCAAGACATCTAAAACAAAATGATTATAAATGCGCGGAATGTGAATACCAGACGAACTACAAGCAAAATTTAAAGATTCACGTAAAAACGAAACACTTCAAACAAATGGATTATAAGTGCACAAAATGTGAATATCAGACAAATTACAAGTCATATTTGCAAGGGCACATAAAGACAAAGCATCTGAACCAAAGTGATTATAAATGCGCAGAGTGTGAATACCAGACAAACTTCAAGTCAAACTTAGAAGTGCACGTAAAAACGAAACACCTCAAACAAATGGATTATAAGTGCACAAAATGTGAATATCAGACAAATTACAAGTCATATTTGCAAGGGCACATAAAGACAAAACATCTGAAACAAAGTGATTATAAATGCACAGAGTGTGAATACCAGACAAACTTCAAGTCGAGCTTAGAAGTGCACATAAAAACAAAACATCTGAAACAAAATGATTATAAATGTGCAGAGTGTGCATACCAGACAAACTCTAAATCATATTTGCAAGGACACATTAAAACCAAACACCTGAAACAAAGTGATTATAAGTGCCCAGAATGTGAGTACCAGACGAACTACAAGCAAAATTTGAAAATGCACGAGAAGGGAAAACATCTCAAACAAAATAATTATAAATGCGTATTGTGTGAATTCAACACTCTCTGGAAGTCAAGTTTGGAAATACACATGAAAACAAAACATCTAAAACAAAATGATTATAAATGTGCAGAATAA
- Protein Sequence
- MYVFAPFHRSALAFPSHLKHLKPNDYKCAEFENQTNFKSILEMHIKTIHLNQSDYNYKCAECEYQTNNKSNLKVHVKTKHLKQSDYKCAEYQTNNKTNLEVHVKTKHLKQFDYKCTECEYQANFKSNLEVHIKTIHLKQCDYKCTECEYQAKYKSSLEVHMKTKHLKQGDYNYKCAECEYQTNNKSNLKVHVKTKHLKQSDHKCTECKYQTNNKSNLEVHVKSKHLKQYDYKCTECEYQTNFKSSLEVHMKTKHLKQNDFKCSECEYQSNYKSNLEVHIKTKHLKQSDYKCTECEYQANFKSSLKVHMKTKHLKQNDYKCAECEYQTNFKQNLKVHVKTKHFKQKDYKCTKCDYQTNNKSNLKVHVKTKHLNQSDYKCVECKYQTNNKSSLELHIKARHLKQNDYKCAECEYQTNYKQNLKIHVKTKHFKQMDYKCTKCEYQTNYKSYLQGHIKTKHLNQSDYKCAECEYQTNFKSNLEVHVKTKHLKQMDYKCTKCEYQTNYKSYLQGHIKTKHLKQSDYKCTECEYQTNFKSSLEVHIKTKHLKQNDYKCAECAYQTNSKSYLQGHIKTKHLKQSDYKCPECEYQTNYKQNLKMHEKGKHLKQNNYKCVLCEFNTLWKSSLEIHMKTKHLKQNDYKCAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -