Mmel149931.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001716.1:16903-25048[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 4.1 4.8e+02 5.0 5.3 1 23 503 525 503 525 0.98 2 26 0.0016 0.19 15.7 3.0 1 23 531 554 531 554 0.98 3 26 0.03 3.5 11.7 1.0 1 23 560 583 560 583 0.95 4 26 0.0034 0.39 14.7 1.7 1 23 589 612 589 612 0.98 5 26 0.011 1.2 13.1 2.6 1 23 618 641 618 641 0.96 6 26 0.09 10 10.2 0.7 1 23 647 670 647 670 0.96 7 26 0.0003 0.035 18.0 1.5 1 23 676 699 676 699 0.96 8 26 0.042 4.9 11.2 0.8 1 23 705 728 705 728 0.96 9 26 0.0003 0.035 18.0 1.5 1 23 734 757 734 757 0.96 10 26 0.042 4.9 11.2 0.8 1 23 763 786 763 786 0.96 11 26 0.0003 0.035 18.0 1.5 1 23 792 815 792 815 0.96 12 26 0.042 4.9 11.2 0.8 1 23 821 844 821 844 0.96 13 26 0.0003 0.035 18.0 1.5 1 23 850 873 850 873 0.96 14 26 0.017 2 12.4 0.8 1 23 879 902 879 902 0.98 15 26 0.00027 0.031 18.2 1.3 1 23 908 931 908 931 0.96 16 26 0.042 4.9 11.2 0.8 1 23 937 960 937 960 0.96 17 26 0.0042 0.48 14.4 1.5 1 23 988 1011 988 1011 0.96 18 26 0.017 2 12.4 0.8 1 23 1017 1040 1017 1040 0.98 19 26 0.00028 0.033 18.1 1.4 1 23 1046 1069 1046 1069 0.96 20 26 0.0043 0.5 14.4 0.6 1 23 1075 1098 1075 1098 0.96 21 26 0.11 13 9.9 2.0 1 23 1104 1127 1104 1127 0.95 22 26 0.059 6.9 10.8 0.6 1 23 1133 1156 1133 1156 0.96 23 26 0.11 13 9.9 2.0 1 23 1175 1198 1175 1198 0.95 24 26 0.059 6.9 10.8 0.6 1 23 1204 1227 1204 1227 0.96 25 26 0.11 13 9.9 2.0 1 23 1246 1269 1246 1269 0.95 26 26 0.059 6.9 10.8 0.6 1 23 1275 1298 1275 1298 0.96
Sequence Information
- Coding Sequence
- ATGTCTCAAGAAATTGCTAAATTTAATATGAACAACGGAATATCTTTGGAAAATCCATGTAATATAAAAGAAGAATTCCAGGATGCGTATTATACAGATGATAAGGAATGCATCTCTGAAACAGCTATCATAGATGCTATTAATATAGGCGGTACTGAAATGAATGAGTATATGAGGAAAGGCAAAATAGAAAAATGTGAAATACCTTCTGTAGATCTTATTAAAACAGACTTACCATCAATGGAAGTAAATGATGAGTATTATATAGATGATAAGGTATGCGTCTCTGAAACAGCTATCACAGATACTATTAATGTAGGTGGTTCTGAAATGAATGAGTATATGAGGAAAGGCAAAATAGAAAAATGTGAAATACCTTCTGTAGATCTTATTAAAACAGACTTACCATCAATGGAAGTAAATGATACAGTAAGCAGCGGTGTCAAAAGAGAAAAAGGAACTTGCTCTCCTTATGTAGAGATTAAATTCTCCAATGAACTCCGTTTTTGTAACCATTGCCAAGGAGTATATCAGGATTACTGCACCAAATGCAGGGTGCTGGTACATATTTTGAACAAAAGATGCTCTCGTGCCTCATATAACAGAATAAGAGAATTACCAGAATATATACTAGAGGCTAGAGAGTCAATTGGACATTTGGGAATTTTCTCTTTAAAAGTTATACCTGAAGATGTAATATTTGGTCCTTTTACGGGCCTTAATTCCATAGGACTGCCTTTGAGGATAAAAGGAGGAAGGTTTATGGTTAGCGATGATAAATTGGAGCATCTGAATTGGATGCAGTTCATTAACCCTGCCAGAAATATTTCAGAACAAAATTTATTCCCATTTCAATATGAACACAAGCTATATTATTGTAGTACTCGTAGAATTCAGGTGGAGGAAGAGTTATTGGTGTATTTTGGTGAAGATTACGAAGATAGTCTGTTAAAAAATGTGGAAATGGATTTTGTTCCCATCACAAAAAATTTTGTTGAAAATGTATTTGCCTGCATTTTCTGTTGCTTGGGATTCAGTTCAAAGAAGTATCTAGCTGAACATAAAGCTATGTCTCATAGTGAAAGTTACGAAATGTTTTCAGTTGAAGGTAGGATGAcacctgtatgtggaatcgctacgaatttcgctAAAAGGGAGATCTGGTTATGGCTAGAAAGAGAACATAAAAAGAAATGGAGGTTAACGGAAGGTCAACTCCAAACCAAAACAGTAGTAAGGGAGCTGGACGGAAGGTTTTCAGCCAACCTAATTCGTAGTAACAAAAAAGAAATTAAAATAATTACCGGCTTAATAACCGGACATTGTTCTTTAAGGAAGCATCTGTACAGATGGGCTTGGTTAGCGAGCCCTGGCGTAGGAGATGTGAAAAACAGGAGGAAACTAGCCTTCATATATTCCGTACCTCCTGCATCGAAGGTTTGCGAGGCTGAAATAGCAAGGCCTTTATCTCGAAGAAATAAGGCCGAAAGATGGAAGCGTGGAATATACAAATGTACGCAATGCAAATTTAGAACAATGTATAACGCAGACTTCAGGCACCACACTAACGAGCATTGCCAGGTGAAAAAATACAAATGTGGAATTTGTCACAGGAGATACAAGGCGAAGGAATCTCTCAAGGTGCACGTAAAAACGAAGCATCTTGGAGAAAGAAATTATAACTGTACAGGGTGTGAATACAAGACAAATAAGAAGACATCTCTGCAAGTCCACATACAAGCAAAACATTTGAAACAAAATAATTATAAGTGCTCAGAGTGTGAATACAAGACAAGTTACAAGGCAAGTTTACAAATGCACATAACAACAAAGCATCTTAAACAAAATGATTATAAATGCACAGAGTGTGAATTCGAGACAAACTACAAGTCACATTTAAAAGAACACATAAATGCAAAGCATCTTAAAGAAAATGATTATAAATGCGCAAAGTGTGAATTCGAGACAAGCATCAAGTCATATTTACAAGTACACATAAAAGCAAAACATCTTAAAGAAAACGATTATAAATGCACAGAGTGTGTATACACGACAAACTACAAGTCAAATCTACAAGCACACATGAAAGGAAAGCATCTTAAAGAACATTTTTATAAATGCGCAGAGTGTGAATTCAAGACAAACTACAAGGCGTATTTACAAGTACACATAAAAGCAAAACATCTTAAAGAAAACGATTATAAATGCACAGAGTGTGTATACACGACAAACTACAAGTCAAATCTACAAGCACACATGAAAGGAAAGCATCTTAAAGAACATTTTTATAAATGCGCAGAGTGTGAATTCAAGACAAACTACAAGGCGTATTTACAAGTACACATAAAAGCAAAACATCTTAAAGAAAACGATTATAAATGCACAGAGTGTGTATACACGACAAACTACAAGTCAAATCTACAAGCACACATGAAAGGAAAGCATCTTAAAGAACATTTTTATAAATGCGCAGAGTGTGAATTCAAGACAAACTACAAGGCGTATTTACAAGTACACATAAAAGCAAAACATCTTAAAGAAAACGATTATAAATGCACAGAGTGTGTATACACGACAAACTACAAGTCAAATCTACAAGCACACATGAAAGGAAAGCATCTTAAAGAACATTTTTATAAATGCGCAGAGTGTGAATTCAAGACAAACTACAAGGCGTATTTACAAGTACACATAAAAGTAAAACATCTTAAAGAAAATTATTATAAATGCACAGAGTGTGTATACACGACAAACTACAAGTCAAATCTACAAGCACACATGAAAGCAAGGCATCTTAAAGAACACTTTTATAAATGCGCAGAGTGTGAATTCAAGACAAACTACAAGGCGTATTTACAAGTACACATAAAAGCAAAGCATCTTAAAGGAAATGATTATAAATGCGGAGAGTGTGAATACAAGACAAACTACAAGGCAACAAAACATCTTAACGAAAACGATTATAAATGCACAGAGTGTATATACACGACAAACTACAAGTCAAATCTACAAGCACACATGAAAGGAAAGCATCTTAAAGAACATTTTTATAAATGCGCAGAGTGTGAATTCAAGACAAACTACAAGGCGTATTTACAAGTACACATAAAAGTAAAACATCTTAAAGAAAATTATTATAAATGCACAGAGTGTGTATACACGACAAACTACAAGTCAAATCTACAAGCACACATGAAAGCAAAGCATCTTAAAGAACACTTTTATAAATGTGCAGAGTGTGAATACAAGACAAACTACAAGGCAAATTTACAAATACACATAAAAGCAAAGCATCTTAAAGAAAATTATTATAAATGCACAGAGTGTGAATTCAAAACAAATTACAAGTCAAGTTTCGAAGAACACGTAAAAGCAAAGCATCTTAAAGAAAATTTTTATAAATGCGCAGAGTGTGAATATAAGACAAGCTATAGGGCAAGATTACAAGTACACATAAAAGCAAAACATCTCAAAGAAAATGATTATAAATGCGCAGAGTCAAAGCATCTTAAAGAAAATTATTATAAATGCACAGAGTGTGAATTCAAAACAAATTACAAGTCAAGTTTCGAAGAACACGTAAAAGCAAAGCATCTTAAAGAAAATTTTTATAAATGCGCAGAGTGTGAATATAAGACAAGCTATAGGGCAAGATTACAAGTACACATAAAAGCAAAACATCTCAAAGAAAATGATTATAAATGCGCAGAGTCAAAGCATCTTAAAGAAAATTATTATAAATGCACAGAGTGTGAATTCAAAACAAATTACAAGTCAAGTTTCGAAGAACACGTAAAAGCAAAGCATCTTAAAGAAAATTTTTATAAATGCGCAGAGTGTGAATATAAGACAAGCTATAGGGCAAGATTACAAGTACACATAAAAGCAAAACATCTCAAAGAAAATGATTATAAATGCGCAGTGTGA
- Protein Sequence
- MSQEIAKFNMNNGISLENPCNIKEEFQDAYYTDDKECISETAIIDAINIGGTEMNEYMRKGKIEKCEIPSVDLIKTDLPSMEVNDEYYIDDKVCVSETAITDTINVGGSEMNEYMRKGKIEKCEIPSVDLIKTDLPSMEVNDTVSSGVKREKGTCSPYVEIKFSNELRFCNHCQGVYQDYCTKCRVLVHILNKRCSRASYNRIRELPEYILEARESIGHLGIFSLKVIPEDVIFGPFTGLNSIGLPLRIKGGRFMVSDDKLEHLNWMQFINPARNISEQNLFPFQYEHKLYYCSTRRIQVEEELLVYFGEDYEDSLLKNVEMDFVPITKNFVENVFACIFCCLGFSSKKYLAEHKAMSHSESYEMFSVEGRMTPVCGIATNFAKREIWLWLEREHKKKWRLTEGQLQTKTVVRELDGRFSANLIRSNKKEIKIITGLITGHCSLRKHLYRWAWLASPGVGDVKNRRKLAFIYSVPPASKVCEAEIARPLSRRNKAERWKRGIYKCTQCKFRTMYNADFRHHTNEHCQVKKYKCGICHRRYKAKESLKVHVKTKHLGERNYNCTGCEYKTNKKTSLQVHIQAKHLKQNNYKCSECEYKTSYKASLQMHITTKHLKQNDYKCTECEFETNYKSHLKEHINAKHLKENDYKCAKCEFETSIKSYLQVHIKAKHLKENDYKCTECVYTTNYKSNLQAHMKGKHLKEHFYKCAECEFKTNYKAYLQVHIKAKHLKENDYKCTECVYTTNYKSNLQAHMKGKHLKEHFYKCAECEFKTNYKAYLQVHIKAKHLKENDYKCTECVYTTNYKSNLQAHMKGKHLKEHFYKCAECEFKTNYKAYLQVHIKAKHLKENDYKCTECVYTTNYKSNLQAHMKGKHLKEHFYKCAECEFKTNYKAYLQVHIKVKHLKENYYKCTECVYTTNYKSNLQAHMKARHLKEHFYKCAECEFKTNYKAYLQVHIKAKHLKGNDYKCGECEYKTNYKATKHLNENDYKCTECIYTTNYKSNLQAHMKGKHLKEHFYKCAECEFKTNYKAYLQVHIKVKHLKENYYKCTECVYTTNYKSNLQAHMKAKHLKEHFYKCAECEYKTNYKANLQIHIKAKHLKENYYKCTECEFKTNYKSSFEEHVKAKHLKENFYKCAECEYKTSYRARLQVHIKAKHLKENDYKCAESKHLKENYYKCTECEFKTNYKSSFEEHVKAKHLKENFYKCAECEYKTSYRARLQVHIKAKHLKENDYKCAESKHLKENYYKCTECEFKTNYKSSFEEHVKAKHLKENFYKCAECEYKTSYRARLQVHIKAKHLKENDYKCAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -