Mmel196960.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010005974.1:1758149-1761370[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 6 7e+02 4.5 6.6 1 23 2 24 2 24 0.96 2 26 0.0014 0.16 15.9 0.7 1 23 30 53 30 53 0.96 3 26 0.2 23 9.1 1.6 1 23 119 142 119 142 0.96 4 26 0.05 5.8 11.0 1.7 1 23 148 171 148 171 0.96 5 26 0.0034 0.39 14.7 0.9 1 23 177 200 177 200 0.98 6 26 0.0062 0.72 13.9 0.9 1 23 206 229 206 229 0.98 7 26 0.74 86 7.3 1.7 1 23 235 258 235 258 0.96 8 26 0.0023 0.26 15.2 4.3 1 23 293 316 293 316 0.98 9 26 0.00057 0.067 17.1 2.3 1 23 322 345 322 345 0.98 10 26 0.00044 0.052 17.5 1.5 1 23 351 374 351 374 0.98 11 26 0.26 30 8.7 1.4 1 23 380 403 380 403 0.95 12 26 0.022 2.6 12.1 1.1 1 23 409 432 409 432 0.98 13 26 0.0044 0.51 14.3 1.2 1 23 438 461 438 461 0.98 14 26 0.027 3.2 11.8 0.9 1 23 467 490 467 490 0.92 15 26 0.0011 0.13 16.2 2.0 1 23 496 519 496 519 0.98 16 26 0.013 1.5 12.8 0.7 1 23 525 548 525 548 0.96 17 26 0.0017 0.2 15.6 1.1 1 23 554 577 554 577 0.98 18 26 0.0054 0.63 14.0 3.3 1 23 583 606 583 606 0.98 19 26 0.013 1.5 12.8 0.9 2 23 613 635 612 635 0.97 20 26 0.0054 0.63 14.0 3.3 1 23 641 664 641 664 0.98 21 26 0.075 8.8 10.4 3.8 1 23 670 693 670 693 0.96 22 26 0.025 2.9 12.0 5.1 1 23 713 736 713 736 0.98 23 26 0.0019 0.22 15.5 1.5 1 23 742 765 742 765 0.98 24 26 0.011 1.3 13.1 1.3 1 23 771 794 771 794 0.96 25 26 0.008 0.94 13.5 3.0 1 23 800 823 800 823 0.97 26 26 0.092 11 10.2 3.1 1 23 829 852 829 852 0.98
Sequence Information
- Coding Sequence
- ATGTACAAGTGTACGCAATGCAAGTTCACAACAATGCACAACGCCGACTTCAGGCACCACTCTAACGAGCATGACAATATGAAAATGTACAAATGTGGAATTTGCGACCGAAGATATAAGGGGAAGAAACTTCTCAAGATGCATGTGGAAAAAATTCATATTAACAATGAAGGAAGAGATACCCAGAAATATTCTGGATGTAACTATTCCAAAGCTAATGAAAATACAAAACAGAGATCTACACATTCACACGATGGTCAAAAACAATGTCAATGCGCGAAATGCAAGTTTCAAACAAGGCACAAATGTCACTTAAAATCACTTATAAAAAAGAAACTTTTGAAAGGAGGCAAATATAATTGCGCAAATTGCGAGTTTAAGACATATTATAGGACTTATTTAGAAAGGCACATTAAAATAAACCATCTCATGGAAAGTAATTATAAATGCGCAAAGTGTCAATTCGAAACAAAGCAGAAGACAAGTTTAGGAAGACACATAAAGGCAAAACATCTTAAGTTACACGATTATAAATGCGTGGAGTGTGATTACGAGACGAACATCAAGAGAAATTTAGAAAGACACATAAAGTCAAAACATCTTAAATCATGGGATTATAAATGCATGGAGTGTGAATACCAGACGAATGAGAAGTCAGCTTTGAAAATACACATAAAGACAAAACATCTTAACTTACACGATTATAAATGCATTGAGTGTGAATACCAGACGAACATCAAGGCACATTTGGAAAGACACATAAAGTCAAAACATCTTAAATTACATGATTATAAATACATGGAGTGTAAATATCAAACGAATAAGAAGGCAAGTTTGGAAATGCACACGAAAGCAAGACATCTTAAATTAAGGGACTATAAATGCAAGGAGTGTGATTACGAGACGAGCTTTAAGCAACATTTAAAAATTCACATAAAGTCAAAACATCTTAAATTACTCGATTATAAATGCATGGAGTGTGAATACCAGACGAGTAGAAAGTCAGATTTGAATATGCACATGAAGAGAAAACATCTTAAAACAAGCGATTATAAATGCACGGAATGTGAATATCAAACGAATAGGAAGTCATCTTTGGAAATACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGAATACCAGACGAACTTCAAGGCAAATTTAGAAATGCACAAAAAAGGAAAACATCCTAAATCAAACGATTATAAATGCGCAGAGTGTGAATACCAGACGAACATCAAGTCATATTTGCAATTACACATAAAGACAAAACATCTTAAATTACACGATTATAAATGCATGGAGTGTGATTACGAGACGAACATCAAGAGAAATTTAGAAAGACACATAAAGTCAAAACATCTTAAAACAAACGATTATAAATGTGTGGAGTGTGAATATGAGACGAACAGCAAGGCAAATTTACAAACTCACAGGTACGGAAAGCACCCTAAATCAAGGGATTATAAATGCGCAAAGTGTGAATATCGGACAAAGGTCAAGTCACTCTTAGAAAAACACATAAAGACAAAACATCTCAAATTACATGATTATAAATGCATGGAGTGTGAATACCAGACGAACTTCAAAGCAAATTTAGAAATACATATGAAAGGAAAGCATCTTAAATCAAGGGATTATAAATGCGCAGAGTGTGAATATCAGACGTATAAGAAGGCAAATTTGGAAAAACACATAAACACAAAACATCTTAAATTGCACGATTATAAATGCATGGAGTGTGAATACAAGACGAACTTCAAGGAAAGTTTAAAAAAACACATAAAGACAAAACATCTTAAAACAAGCGATAATAAATGCACGGAATGTGAATATCAAACGAATAGGAAGCCATATTTGGAAATACACATAAAGACAAAACATCTTAAATTGCACGATTATAAATGCATGGAGTGTGAATACAAGACGAACTTCAAGGAAAGTTTAAAAAAACACATAAAAACAAAACATCTTAAAACAAGCGATTATAAATGCACGGAATGTGAATACCAGACTAACGTCAAGTCATGTTTAGAAAGACACAGGAAAGCAAAGCATGTTAAATTAAGGGATTATAAAAGTGCATGGACTACAAAACATCTTAAATTAAACGACTATAAATGCACGGAGTGCGAATACCAGACGAACTCCAAGTCGCATTTTGAATTACACACAAAGACAAAACATCTTAAAGTACACGATTATAAATGCATGGAGTGTGACTACCTGACTAACGTCAAGTCAAATTTAGAAAAACACTTAAAGACAAAACATCTTAAATCAAGCGATTTTAAATGCATGAATTGTGAATACCAGACGAACTTCAAGTCAAGTTTAGAAAGACATATGATGGCAATGCATACTAAATTAAGGGATTATAAGTGTATGGAGTGTGAATACCAGACGAAGTCCAAGAGAGATTTAAAGAGACATACGAAAGTAAAACATCTTAAATTACACGATTATAAATGCATGGATTGTGAATACCAGACAAACGTTAAGTCAAGTTTCGAAAAACACACAAAGAGAAAACATCCTGAAAAGATTttccaatcaattaatgtttgggcaggaataattggcaattttttaattggaccatgcgtattgccgccacgattgaatggtgaactttatttacagttccttcggaacgcttttctggattcaatagagcatttgccacttgcaacccgccaaagcatgtattttatgcatgatggggccccacctcattttagcgttgctgtacgcgaccacctgaataacgtctatccaaaccgttggataggcagaggaggtcccattgcctggcctccatggtctcccgacctaacgccaatggattttcacctgtggggtcatctcaaaaccttggtgtatttctctccggttgatactagggaggaacttttacagagaatcacatttcattgtgatatgataagaaacaacgctgggttgttgtggcgagtacagcagtcctctattcgtcgtgcccgcgagtgtatcagagttcacgaagtccatgttgaacccacgtatgaagtttttaattga
- Protein Sequence
- MYKCTQCKFTTMHNADFRHHSNEHDNMKMYKCGICDRRYKGKKLLKMHVEKIHINNEGRDTQKYSGCNYSKANENTKQRSTHSHDGQKQCQCAKCKFQTRHKCHLKSLIKKKLLKGGKYNCANCEFKTYYRTYLERHIKINHLMESNYKCAKCQFETKQKTSLGRHIKAKHLKLHDYKCVECDYETNIKRNLERHIKSKHLKSWDYKCMECEYQTNEKSALKIHIKTKHLNLHDYKCIECEYQTNIKAHLERHIKSKHLKLHDYKYMECKYQTNKKASLEMHTKARHLKLRDYKCKECDYETSFKQHLKIHIKSKHLKLLDYKCMECEYQTSRKSDLNMHMKRKHLKTSDYKCTECEYQTNRKSSLEIHIKSKHLKLHDYKCMECEYQTNFKANLEMHKKGKHPKSNDYKCAECEYQTNIKSYLQLHIKTKHLKLHDYKCMECDYETNIKRNLERHIKSKHLKTNDYKCVECEYETNSKANLQTHRYGKHPKSRDYKCAKCEYRTKVKSLLEKHIKTKHLKLHDYKCMECEYQTNFKANLEIHMKGKHLKSRDYKCAECEYQTYKKANLEKHINTKHLKLHDYKCMECEYKTNFKESLKKHIKTKHLKTSDNKCTECEYQTNRKPYLEIHIKTKHLKLHDYKCMECEYKTNFKESLKKHIKTKHLKTSDYKCTECEYQTNVKSCLERHRKAKHVKLRDYKSAWTTKHLKLNDYKCTECEYQTNSKSHFELHTKTKHLKVHDYKCMECDYLTNVKSNLEKHLKTKHLKSSDFKCMNCEYQTNFKSSLERHMMAMHTKLRDYKCMECEYQTKSKRDLKRHTKVKHLKLHDYKCMDCEYQTNVKSSFEKHTKRKHPEKIFQSINVWAGIIGNFLIGPCVLPPRLNGELYLQFLRNAFLDSIEHLPLATRQSMYFMHDGAPPHFSVAVRDHLNNVYPNRWIGRGGPIAWPPWSPDLTPMDFHLWGHLKTLVYFSPVDTREELLQRITFHCDMIRNNAGLLWRVQQSSIRRARECIRVHEVHVEPTYEVFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -