Mmel132816.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melolontha melolontha
Gene Symbol
-
Assembly
GCA_935421255.1
Location
CAKXYX010001382.1:860717-863161[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.12 15 9.8 5.5 1 23 50 72 50 72 0.99
2 24 0.0014 0.16 15.9 0.4 1 23 78 101 78 101 0.97
3 24 0.014 1.6 12.8 2.5 1 23 165 188 165 188 0.98
4 24 0.016 1.9 12.6 3.6 1 23 194 217 194 217 0.97
5 24 0.0084 0.98 13.4 4.3 1 23 223 246 223 246 0.98
6 24 0.00016 0.018 18.9 0.8 1 23 252 275 252 275 0.98
7 24 0.0069 0.8 13.7 1.0 1 23 281 304 281 304 0.97
8 24 0.0044 0.51 14.3 2.2 1 23 310 333 310 333 0.96
9 24 0.011 1.3 13.0 0.9 1 23 339 362 339 362 0.98
10 24 3.5 4.1e+02 5.2 1.4 1 23 368 391 368 391 0.96
11 24 0.00053 0.061 17.2 1.7 1 23 397 420 397 420 0.98
12 24 4.8e-05 0.0056 20.5 1.1 1 23 426 449 426 449 0.98
13 24 0.016 1.9 12.5 1.5 1 23 455 478 455 478 0.98
14 24 0.0014 0.17 15.9 3.3 1 23 484 507 484 507 0.98
15 24 0.0068 0.79 13.7 1.7 1 23 513 536 513 536 0.98
16 24 0.12 14 9.8 6.5 1 23 542 565 542 565 0.98
17 24 0.0017 0.2 15.6 1.5 1 23 571 594 571 594 0.98
18 24 0.027 3.1 11.9 0.4 1 23 600 623 600 623 0.96
19 24 0.0083 0.96 13.5 1.1 1 23 629 652 629 652 0.97
20 24 0.0099 1.1 13.2 2.8 1 23 658 681 658 681 0.98
21 24 0.0016 0.19 15.7 2.0 1 23 687 710 687 710 0.97
22 24 0.017 2 12.4 2.4 1 23 716 739 716 739 0.98
23 24 0.0063 0.73 13.8 6.4 1 23 745 768 745 768 0.97
24 24 0.014 1.6 12.8 2.2 1 23 774 797 774 797 0.98

Sequence Information

Coding Sequence
ATGTATTCGAATTTCCCTCAAGATTCTCATGCAACTGATTCCTTTAGTTTCAGACACTGTATACTTCCCTTACGGGAGGTTCACAGGCGAGACGTAGAAACGCGTTTATCTCTAAGAAGCAAGGTCAAAAGACGAAAGTGTGGAATATACAAATGTACGCACTGCAAGTTCAGAACAATGTACAACGCCGACCTCAGGAACCACACTAACAAACATTACGCGGTCAAAATGTACAAATGTGGAATTTGTAGCAGAAGATACAAGGCGAAGGAATCTCTCAAGGTGCACGTGGAAACAATTCATGTTGACAATGAAGGAAGAGATGTCCAAAAATACTCGACATATGATTCTTTCAAAGCTAATATTAAAAATATAAAAGAGAGGTTACCATACTCACATTATGTTGAATCCTCGAAATGTAAGTTTCTAACAAGGCACAAATGTCACTTGAAAAAATCACTTGCAAAAGTCAAAGATCCGAACAGAGGCAAATATAAGTGCGAAAATTGCGAGTTTAGGACATATTACAGGTCTTATTTAGAAATGCACATGAAAATAAAACATCTTAAGTTAGGCGATTATAAATGCAAGGATTGTGAATACCAAACGAACTTCAAGTCGTATTTAAAACAACACAGAATCTCAAGGCATCTTAAATTACGTGATTATAAATGCATGAAGTGTGACTACAAGGCAAATCTTAAGTCACATTTGGAAAAACACATGAAATCAAAACATCTTAAATTACGCAATTATAAATGCATGGAATGTGACTACAAGGCAAGTCAAAAGTCAAATTTGGAAATACACATAAAGTCGAAACATCTCAAATTATATGATTATAAATGCATGAAGTGTGGATATCAGACGAACGTCAAGTCAAAATTAGAAGTACACATTAAGGAAAAACATCTTAAATTATATGATTATAAATGCATGGAGTGTAAATACCAGACGAACACGAAGAAAAATTTAGAAACACACATAAAAGCAAAACATCTTAAATTACGCGATTATAAATGCATGGATTGTGAATACCAAACGACCTCCAACCTAAATTTAGAACTACACATAAAGTCAAAACATCTTAAATTATTTGATTATAAATGCATTGATTGCAAATACCAGTCGAACATCAAGTCACGTTTAGCAAAACACATAAAGTCAACTCATCTTAAATTGTACGATTATAAATGCAAAGATTGTGAATATCAAACGAACTCCAAGTCATCGTTGGAACTACACATAAAGTCAAGGCATCTTAAATTATGCGATTATAAATGCATGGACTGTGACTACAATGCAACTCAAAAGTCAAATTTAGAAAGACACATAAAGTCAAGGCATCTTAAATTGTGCGATTATAAATGCAAAGATTGTGAATACCAAACGAGCTCCGACCTAAATTTGAAACTACACATAAAGTCAAAACATCTTAAATTGTACGATTATAAATGCAAGGATTGTGAATACCAAACGCACTCCAAGTCAAATTTGGAAATACATATAAAGTCAAAACATCTTAAAGTGTACGATTATAAATGCAAGGATTGCGAATACCAAACGAACTCCAAGCTAAATTTGGAACTACACCTAAAGTCAAGACATCTTAAATTGTACGATTATAAATGCATGCATTGTAAGTACCAGACGAACTTCAAGTCAAGATTAGAAAAACACATAAAGACAAAACATCTTAAATTACGCGATTATAAATGCAAGGATTGTGAATATCAAACTAGCTCCAAGCTAAATTTGGAACTACACATAAAGTCAAAACATCTTAAATTAAACGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTCAAATCAGCTTTAGAAGAACACATCAAGGCAAAACATCTTAAATTACTCGATTACAAATGCATAGAATGTGACTACAAGGCAAGTCGCAAGGCACATTTAGAAGCTCACATAAAGTCAAGGCATCTTAAATTACGCGATTATAAATGCATGGATTGTGAGTACCAGACGAACTTCAAGTCAAAATTAGAAAAACACATAAAGTCAAAACATCTTAATTTAAACGATTATAAATGCTTGGAGTGTGAATATCAGACGAGCTTCAAGAGCAATTTAGAAAGACACGTAAAGTCAAAGCATCTTAAATTAAATGATTATAAATGCATGGAGTGTGAATACCAGACGAACTTCAAGGCATCTTTAGAAAGACACAGGAAAACCAAACATCTTAAATTACGCGATCATAAATGCACGGATTGTGAATACCAGACGAGCTTCAAGAGTCATTTAGAAAAACACATAAAGTCAAAACATCTTAAAATAAACGATTATAAGTGCATGGATTGTGAATACCAGACGAACTTCAAGTCATCTTTAGAAGCACACAAAAAAACAAAACATCTTAAATTGAGGGATTATAAACGTATGGATTGTGAATACCAGCCGATCATCTAA
Protein Sequence
MYSNFPQDSHATDSFSFRHCILPLREVHRRDVETRLSLRSKVKRRKCGIYKCTHCKFRTMYNADLRNHTNKHYAVKMYKCGICSRRYKAKESLKVHVETIHVDNEGRDVQKYSTYDSFKANIKNIKERLPYSHYVESSKCKFLTRHKCHLKKSLAKVKDPNRGKYKCENCEFRTYYRSYLEMHMKIKHLKLGDYKCKDCEYQTNFKSYLKQHRISRHLKLRDYKCMKCDYKANLKSHLEKHMKSKHLKLRNYKCMECDYKASQKSNLEIHIKSKHLKLYDYKCMKCGYQTNVKSKLEVHIKEKHLKLYDYKCMECKYQTNTKKNLETHIKAKHLKLRDYKCMDCEYQTTSNLNLELHIKSKHLKLFDYKCIDCKYQSNIKSRLAKHIKSTHLKLYDYKCKDCEYQTNSKSSLELHIKSRHLKLCDYKCMDCDYNATQKSNLERHIKSRHLKLCDYKCKDCEYQTSSDLNLKLHIKSKHLKLYDYKCKDCEYQTHSKSNLEIHIKSKHLKVYDYKCKDCEYQTNSKLNLELHLKSRHLKLYDYKCMHCKYQTNFKSRLEKHIKTKHLKLRDYKCKDCEYQTSSKLNLELHIKSKHLKLNDYKCVECEYQTNFKSALEEHIKAKHLKLLDYKCIECDYKASRKAHLEAHIKSRHLKLRDYKCMDCEYQTNFKSKLEKHIKSKHLNLNDYKCLECEYQTSFKSNLERHVKSKHLKLNDYKCMECEYQTNFKASLERHRKTKHLKLRDHKCTDCEYQTSFKSHLEKHIKSKHLKINDYKCMDCEYQTNFKSSLEAHKKTKHLKLRDYKRMDCEYQPII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-