Mmel189845.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010004188.1:8718-10856[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.016 1.8 12.6 0.4 1 23 19 42 19 42 0.94 2 22 0.21 24 9.1 4.5 1 23 109 132 109 132 0.97 3 22 0.016 1.8 12.6 2.0 1 23 138 161 138 161 0.98 4 22 0.089 10 10.2 3.1 1 23 167 190 167 190 0.98 5 22 0.00048 0.056 17.3 1.5 1 23 196 219 196 219 0.98 6 22 0.00015 0.018 18.9 1.3 1 23 225 248 225 248 0.98 7 22 0.0012 0.14 16.1 1.0 1 23 254 277 254 277 0.98 8 22 0.00068 0.08 16.9 1.8 1 23 283 306 283 306 0.98 9 22 0.0045 0.52 14.3 5.2 1 23 312 335 312 335 0.98 10 22 0.16 18 9.4 5.8 1 23 341 364 341 364 0.98 11 22 0.05 5.8 11.0 3.4 2 23 370 392 369 392 0.97 12 22 0.00027 0.032 18.1 1.7 1 23 398 421 398 421 0.98 13 22 0.022 2.5 12.1 2.8 2 23 428 450 427 450 0.96 14 22 0.0037 0.44 14.5 2.3 1 23 456 479 456 479 0.98 15 22 0.0023 0.27 15.2 2.1 1 23 485 508 485 508 0.98 16 22 0.0031 0.36 14.8 0.9 1 23 514 537 514 537 0.98 17 22 0.0014 0.16 15.9 1.2 1 23 543 566 543 566 0.98 18 22 0.00044 0.051 17.5 3.3 1 23 572 595 572 595 0.98 19 22 0.00054 0.063 17.2 1.5 1 23 601 624 601 624 0.98 20 22 0.0012 0.14 16.1 1.0 1 23 630 653 630 653 0.98 21 22 0.00068 0.08 16.9 1.8 1 23 659 682 659 682 0.98 22 22 0.0045 0.52 14.3 5.2 1 23 688 711 688 711 0.98
Sequence Information
- Coding Sequence
- ATGTACAACGCCGACTTCAGGTACCACACTAACGAACATTACAAAGTGAAAATATACAAATGTGGAATTTGTCGCAGAAGATACAAGGCGAGGGAATCACTTGAGACGCACGTGGTAAAAATTCATGCTGACAATGCAGCAGGAAGAGATGTCCAAAATTACTCTACGCGTGCCTCGTTTAAAGCTAATATTAAAAATAAGAAAGAAAGATCTGCACACTCACATGGCGATAAAAAACAATGTCCGTGCTCGAAATGCAAATTTCAAAAACGGAACAAATGTCACTTAAAAACACATGCAAACATACAACAACCGTACAGGAAATATAAGTGTGCACATTGCGAGTTTAAGACATATTACAGGTCTTATTTAGAAATTCATACGAAAATGAAACATCTCATGGAAATTGATTATAAATGTAGGGAGTGTGAATTCAAGACAAACGTCAAGTCAAGTTTGGAAGTACACACAAAGACAAAACATCTGAAACAAAAGGATTATGAATGCGCAGAATGTGAATACAAGACAAATAAAAGGACATGTTTAAAAGCACACGTGAAAACCAAACATCTTAAAGAATATAATTACAAATGCGCAGAGTGTGAGTACAAGACGAACTACAAGTCAGATTTAGTAAAACACATAAAAACAAAACATCTTAAAGAACACGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACGACAAGTCACAGTTAGTAAAACACATAAAAACAAAACATCTTGAAGAACACGATTACAAATGCGCAGAGTGTGAATACAAGACAAATACAAAGCTAAATTTAAAATTGCACATAAAGACAATACATCTAAAGGAACACGATTATAAATGCGCACAATGTGAATACAAAACAAACAAGAAGTATAATTTAAAGATTCACATAAAGACAGTACATCTTAAAGTAATCGATTTTAAATGTGTTGAATGTGAATACAAAACAAACAGCAAGTCACATTTCAAAAACCACATGAACTCAAAACATCTTAAAAAAAGTATTTATAAATGCTCAGAGTGTGACTTTAAAACACACTACAAGCTAAGTTTAAAAAAACACACCAAGACACTACATCTTAAAATCGATAATAAATGCGCAATATGTGAATTCAAGACAAACAAGAAGTCATGTTTAGAAAGACACCTAAAGACAGTTCATTTTAAAATAAGCGATTATAGATGCGCAGAATGTGAATACATGACAAACAACAAGTCACATTTAGAAAGACACCTAACGACAGTTCATCTTAAAATAACCGATTGTAAATGCGCAGAGTGTGAATTCCAGGCAAGATACAAGTCAGAGTTAATAAAACACATGAAAACAAAACATCTTAAAGAATACGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCACAAGTCACAGTTAGTAGGACACATAAAAACAAAACATCTTAAAGAACACGATTACAAGTGCGCTGTGTGTGAGTACAAGACGAACCACAAGTCAAATTTAGTAGGACACATAAAAACAAAACATCTTAAAGAACACGATTTCAAATGCGCAGAGTGTGAGTACAAGACGAACCAGAGGTCACAGTTAGTAGGACACATAAAAACAAAACATCTTAAAGAACACGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCAGAAGTCAGATTTAGGAAAACACATAAAATCAAAACATCTTAAAGAACACGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCACAAGTCACAGTTAGCAAAACACATAAAAACAAAACATCTTGAAGAGCAGGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACTACAAGTCAGAGTTAGTAAAACACATAAAAACAAAACATCTTGAAGAACACGATTACAAATGCGCAGAGTGTGAATACAAGACAAATACAAAGCTAAATTTAAAATTGCACATAAAGACAATACATCTAAAGGAACACGATTATAAATGCGCACAATGTGAATACAAAACAAACAAGAAGTATAATTTAAAGATTCACATAAAGACAGTACATCTTAAAGTAATCGATTTTAAATGTGTTGAATGTGAATACAAAACAAACAGCAAGTCACATTTCAAAAACCACATGAACTCAAAACATCTTTAA
- Protein Sequence
- MYNADFRYHTNEHYKVKIYKCGICRRRYKARESLETHVVKIHADNAAGRDVQNYSTRASFKANIKNKKERSAHSHGDKKQCPCSKCKFQKRNKCHLKTHANIQQPYRKYKCAHCEFKTYYRSYLEIHTKMKHLMEIDYKCRECEFKTNVKSSLEVHTKTKHLKQKDYECAECEYKTNKRTCLKAHVKTKHLKEYNYKCAECEYKTNYKSDLVKHIKTKHLKEHDYKCAECEYKTNDKSQLVKHIKTKHLEEHDYKCAECEYKTNTKLNLKLHIKTIHLKEHDYKCAQCEYKTNKKYNLKIHIKTVHLKVIDFKCVECEYKTNSKSHFKNHMNSKHLKKSIYKCSECDFKTHYKLSLKKHTKTLHLKIDNKCAICEFKTNKKSCLERHLKTVHFKISDYRCAECEYMTNNKSHLERHLTTVHLKITDCKCAECEFQARYKSELIKHMKTKHLKEYDYKCAECEYKTNHKSQLVGHIKTKHLKEHDYKCAVCEYKTNHKSNLVGHIKTKHLKEHDFKCAECEYKTNQRSQLVGHIKTKHLKEHDYKCAECEYKTNQKSDLGKHIKSKHLKEHDYKCAECEYKTNHKSQLAKHIKTKHLEEQDYKCAECEYKTNYKSELVKHIKTKHLEEHDYKCAECEYKTNTKLNLKLHIKTIHLKEHDYKCAQCEYKTNKKYNLKIHIKTVHLKVIDFKCVECEYKTNSKSHFKNHMNSKHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -