Mmel064452.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000534.1:2475736-2482471[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.5 1.7e+02 6.4 3.8 1 23 111 133 111 133 0.95 2 22 0.024 2.8 12.0 0.1 1 23 139 162 139 162 0.94 3 22 0.061 7.2 10.7 5.0 1 23 229 252 229 252 0.97 4 22 0.0045 0.52 14.3 1.6 1 23 258 281 258 281 0.98 5 22 0.0095 1.1 13.3 0.9 1 23 315 338 315 338 0.98 6 22 8.7e-05 0.01 19.7 0.7 1 23 344 367 344 367 0.98 7 22 0.00051 0.059 17.3 2.2 1 23 373 396 373 396 0.98 8 22 0.00036 0.041 17.8 3.4 1 23 402 425 402 425 0.97 9 22 0.015 1.7 12.7 1.7 1 23 431 454 431 454 0.98 10 22 8.3e-05 0.0097 19.7 1.3 1 23 460 483 460 483 0.98 11 22 0.00013 0.015 19.1 1.3 1 23 489 512 489 512 0.98 12 22 0.0018 0.21 15.5 1.4 1 23 518 541 518 541 0.97 13 22 0.0075 0.87 13.6 0.4 1 23 547 570 547 570 0.98 14 22 0.00093 0.11 16.4 0.8 1 23 576 599 576 599 0.98 15 22 0.0099 1.2 13.2 2.0 1 23 605 628 605 628 0.96 16 22 0.00049 0.057 17.3 1.1 1 23 634 657 634 657 0.98 17 22 0.00052 0.06 17.3 2.7 1 23 663 686 663 686 0.98 18 22 0.066 7.7 10.6 2.2 1 23 692 715 692 715 0.98 19 22 6.7 7.8e+02 4.3 0.4 1 16 721 736 721 738 0.85 20 22 0.51 59 7.8 0.6 5 23 740 759 739 759 0.93 21 22 0.00029 0.034 18.0 4.9 1 23 780 803 780 803 0.98 22 22 0.0018 0.21 15.6 4.1 1 23 809 832 809 832 0.98
Sequence Information
- Coding Sequence
- ATGTCCGACCCTATTTCCTTAACTAATAACCGTGTCATTAACCTTACTACGGTGGTAATACAAAGACACGGGGAGAAAAACCCAAGTTTCCTGCGACGTGTATTGCCTCACTTACCCGCTCCTGCCAACGTCTGGCGGCCCACTCAGCTACACAGACCGCCTCGGCCCAGAGTTAGGAGACCCAGAGGTATTAAAAAAAAGCCAAAAGGAGGTGCTAAAAAGAGCACCACCGGATTTGGCTTCGCACATCCCTCGGCGAAGGTTCACGAGCTTGAAATAGAAAGGCGTTCATCTCTATGGAACAGGGCCAAACTATGGGAGCGTGGAATATACAAATGTACGCAATGCAAGTTCAGAACAATCTACAGAGCCGACTTCAGGCACCATGCTAGCGAACATTACCAGGTGAAAGTGTACAAGTGTGGAATTTGTCGTAGAGGATACAAGGCTAGGGAATCCCTCAACGCGCACGTGGAACAAATTCATGCCGACAATGCAGTAGAAGATGTCCAAACATACTCTACGTGTGACTATTTCAAAGCTAATATTGAAAATATGAAAGAGAGATCTACACACTCGCATGATCGTGAGAGACAATGTCCATGGCCGAAACGCAAATTTCAAACAAGGAGCAAATGTCGCTTCAAATCACAGATAAAAATAAAACATCCGAATAGAGGAAAATATAAGTGCCCACATTGCGAGTTTAAGACATATTACAGGTCTTATTTAGAAATGCACACCAAAATGAAACATCTCATAGAAAGTTATTATAAATGCAAGGAGTGTGAATACAAGACAAATTATGTGTCAAAATTAGAAGTACACATAAAAACAAAACATTTTCAAGAAAATAATTATAAATGGGCAGAGTGTGAATATAAAACAAATAAGTCAAGTTTAAAAGCACAGATAGAAATAAAACATCTTAAAATAAGCGCTTATAAATGCGCAGAATGTGAGTATGAGACAAATTATAAGTCATATTTAAAAGGACACATAAAAATAAAACATCTTAAAGTAAGCGATTATAAATGCGCAGAGTGTGAATACGAGACAAATAATAAGTCAAATTTAGAAAGACATCTAAAGAGGATACACCTTAAAGTATACGATCATAAATGCGGAGAATGTGAATACAAGACAAATGACAAGTCAGACTTAGTAAGACACATAAAGACAAAACATCTTAAAGAACACGATTATAAATGCGCAGACTGTGAGTACAAGACAAACAATAAATCACATTTAAAGAAACACTTAATGATAAGACATTATAAAAATTGCGATCATAAATGCGCAGAATGTGATTACATGACAAATACGGGGTCACGTTTAAAAGCACACATAAAGACCAAACATCTTAACATAGGCGATTATAAATGCACAGACTGTGAATATGAGACAAATAAGAAGTCAAATTTAAAAGCGCACATAAAAATAAAACATCTTAAAGTAAGCGAATATAAATGCGCAGAGTGTGAATACGAGACAAATAATAAGTCAAATTTAGAAAGACACCTAAAGAGAAGACATCTCAAAATATACGATCATAAATGCGGAGAATGTGAATACAAGACAAATGACAAGTCAGACTTAGTAAGACACGTGAAGAGAGTACATCTTAAAGAACACGATTATAAATGTGCAGAGTGTGAATATAAGACAAATGAAAAGCCATACTTAGTAAGACACATAAAGACAATACATCTTAAAGAACACGATTATAAATGCTCAGAGTGTGAATATGAGGCAAGTAAAAAGTCATATTTAAAAGCACACATAAAAATAAAACACCTTAAAGTAGACGATTTTAAATGCGTAGAATGTGAATTCAAAACAAGCCACAAGCCAACTTTAAAAAGACACATAAAGGCAATACATCTTAAAGAACACGATTATAAATGCGCGGAGTGTAAATATGAGACAAATAACAAGCGAGATTTAGAAAGACACATAAAGAAAATACATCTTAAAGTAAGCGATTATAAATGCGCAGAGTGTGAATACGAGACAAATAATAAGTCACATTTAGAAAGACACCTAAAGAGCAAACACCTTAAAATATACGATCATAAGTGCGCAGAATGTGAATATAAGACAAATGAAATGTCATACTTAGTAAGGCACATAAAGACAAAACATCTTAATATACACGATTATAAATGCACAGAGTGTAAATACGAGACAAATAATAACAAGCGATTAGAAATGCGCGAGTGTGAATACGAGAGAAATAATAAGTCAAGTTTAGAAAGACATCTAAAGAGAAGACATCTTAAAATACAGGATCAGAAATGCGGAGAATGTGAACAAATACATCTGAAAGAACACGATTATAAATGCGCAGACTGTGAGTACAAGACAAACAATAAATCACATTTAAAGAAACACCTAAAGACTAGACATCTTAAAATAAACGAGCATAAATGCGCAGAATGTGATTACATAACAAATACGGAGTCACATTTAAAAACACATATAAAGACCAAACATCTTAACATCAGCGATTATAAATCCACAGAGTGTGAATTCAAGACAAACTAG
- Protein Sequence
- MSDPISLTNNRVINLTTVVIQRHGEKNPSFLRRVLPHLPAPANVWRPTQLHRPPRPRVRRPRGIKKKPKGGAKKSTTGFGFAHPSAKVHELEIERRSSLWNRAKLWERGIYKCTQCKFRTIYRADFRHHASEHYQVKVYKCGICRRGYKARESLNAHVEQIHADNAVEDVQTYSTCDYFKANIENMKERSTHSHDRERQCPWPKRKFQTRSKCRFKSQIKIKHPNRGKYKCPHCEFKTYYRSYLEMHTKMKHLIESYYKCKECEYKTNYVSKLEVHIKTKHFQENNYKWAECEYKTNKSSLKAQIEIKHLKISAYKCAECEYETNYKSYLKGHIKIKHLKVSDYKCAECEYETNNKSNLERHLKRIHLKVYDHKCGECEYKTNDKSDLVRHIKTKHLKEHDYKCADCEYKTNNKSHLKKHLMIRHYKNCDHKCAECDYMTNTGSRLKAHIKTKHLNIGDYKCTDCEYETNKKSNLKAHIKIKHLKVSEYKCAECEYETNNKSNLERHLKRRHLKIYDHKCGECEYKTNDKSDLVRHVKRVHLKEHDYKCAECEYKTNEKPYLVRHIKTIHLKEHDYKCSECEYEASKKSYLKAHIKIKHLKVDDFKCVECEFKTSHKPTLKRHIKAIHLKEHDYKCAECKYETNNKRDLERHIKKIHLKVSDYKCAECEYETNNKSHLERHLKSKHLKIYDHKCAECEYKTNEMSYLVRHIKTKHLNIHDYKCTECKYETNNNKRLEMRECEYERNNKSSLERHLKRRHLKIQDQKCGECEQIHLKEHDYKCADCEYKTNNKSHLKKHLKTRHLKINEHKCAECDYITNTESHLKTHIKTKHLNISDYKSTECEFKTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -