Mmel065635.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000542.1:1987876-1990695[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 3.9 4.5e+02 5.1 3.1 1 23 56 78 56 78 0.97 2 28 0.0013 0.15 16.0 0.7 1 23 84 107 84 107 0.94 3 28 3.5 4.1e+02 5.2 9.7 2 23 146 168 145 168 0.95 4 28 0.019 2.2 12.3 5.3 1 23 173 196 173 196 0.98 5 28 0.0076 0.88 13.6 3.5 1 23 231 254 231 254 0.98 6 28 0.33 39 8.4 4.1 1 23 260 283 260 283 0.96 7 28 0.015 1.7 12.7 5.9 1 23 289 312 289 312 0.98 8 28 0.0028 0.32 15.0 1.5 1 23 318 341 318 341 0.98 9 28 0.0028 0.32 15.0 1.5 1 23 347 370 347 370 0.98 10 28 0.0027 0.31 15.0 5.4 1 23 376 399 376 399 0.98 11 28 0.0022 0.26 15.3 0.7 1 23 405 428 405 428 0.98 12 28 0.33 39 8.4 4.1 1 23 434 457 434 457 0.96 13 28 0.02 2.3 12.3 1.5 1 23 463 486 463 486 0.98 14 28 0.011 1.3 13.1 4.8 1 23 492 515 492 515 0.98 15 28 0.016 1.8 12.6 0.5 1 22 521 542 521 542 0.97 16 28 0.021 2.4 12.2 5.9 1 23 550 573 550 573 0.98 17 28 0.0013 0.15 16.0 0.7 1 23 579 602 579 602 0.98 18 28 0.33 39 8.4 4.1 1 23 608 631 608 631 0.96 19 28 0.032 3.7 11.6 0.2 1 23 637 660 637 660 0.96 20 28 0.019 2.2 12.3 2.3 1 23 666 689 666 689 0.98 21 28 0.0091 1.1 13.3 2.9 1 23 695 718 695 718 0.98 22 28 0.0049 0.57 14.2 2.0 1 23 724 747 724 747 0.96 23 28 0.019 2.2 12.3 0.8 1 23 753 776 753 776 0.98 24 28 0.0071 0.83 13.7 0.9 1 23 782 805 782 805 0.98 25 28 0.0028 0.32 15.0 1.5 1 23 811 834 811 834 0.98 26 28 0.0058 0.68 13.9 1.0 1 23 840 863 840 863 0.98 27 28 0.011 1.2 13.1 5.9 1 23 869 892 869 892 0.98 28 28 0.008 0.93 13.5 3.6 1 23 898 921 898 921 0.98
Sequence Information
- Coding Sequence
- ATGACTGGAATTAAATCATATTGTTGTATTCAAAATGTTTATAAATTTTATTGGAATTCATTTACTTTCAGAGACTGCGCAGTTCCTTCAGCGGAGGTTCAGGATCTAGAAATAGAAAAGCGCTCATTCCTAAGAAGTAAGGCCAAACGATGGAAGAGTAAAATATACAAATGTACGCAGTGCAAGTTCAGAACAATGTACAACGCCGCCTTCAGGTACCACACTAACGAACATTACGAAACGAAAATGTACAAATGCGGAATTTGTCGCAGAAGATACAAGACGAGGGAATCTCTTGAGACTCACGTGGTAAAAATTCATGGTGACAATGCAGGAAGACATGTCCAAAATTACTCTACGTGTGACTCTTTCAAAGCTAATATTAAAAATAAGAAAGAGGGATCTGCACACTCACAGGACGATAAAAAACAATGTTCATGCTCGAAATGCAAATTTCAAACAAGGAACAAATGTCACTTAAGAACACATATAAAAATAGAACATGCAAACAGGAAATATAAGTGTACACATTGCGAGTTTAAGACATATTACAGGTCTTATTTAGAAATTCACATGAAAATGAAACATCTAATAGAAGGTTATCATAAATGCAGGGAGCGTCAATACCAGACGAACTTCAGGTCAAGTTTGGAAGTACACACAAAGATAAAACAACTGAAACAAAAGAATTATAAGTGTGCAGAATGTGAATACAAGACAAATAACAGGTCATGTTTAAAAGCACACGTGAAAACGAAACATCTTAAAGAATATGATTACAAATGCGTACAGTGTGAGTACAAGACACAACACAAGTCATGTTTAGAAAGCCACATAAAGGCAGTGCATCTTAAAGAACACGATTACAAATGCGCAGAGTGTAAGTACAAGACACAACATAAGTCATGTTTAGAAAGACACATAAAGACAGTGCATCTTAAAGAATACGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACGAGAAGTCAAAGTTAGTACGACACATAAAAACAAAACATCTTAAAGAACACGATTATAAATGTGCAGAGTGTGAATACAAGACGAACGAGAAGTCAAAGTTAGTACGACACATAAAAACAAAACATCTTAAAGAACACGATTATAAATGTGCAGAGTGTGAATACAAGACACACCACAAGTCAAATTTAGAGAAACACATGAAGATAAAACATCTTAAAGAATATGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCTGAAGTCAACGTTAGTACGACACATAAAAACAATACATGTTAAAGAATATGATTACAAATGCGTACAGTGTGAGTACAAGACACAACACAAGTCATGTTTAGAAAGCCACATAAAGGCAGTGCATCTTAAAGAATACGATTACAAATGCGCAGAGTGTGAGTACAAGACACAACACAAGTCACTTTTAGAAGGACACCTAAAGACCGTGCATCTTAAAGAATATGATTACAAATGCGCAGAGTGTGAGTACAAGACACAACACAAGTCATGTTTAGAAAGACACATAAAGACAGTGCATCTTAAAGAATACGATTACAAATGTGCAGAGTGTGAGTACAAGACGAACGAGAAGTCAAAGTTAGTACGACACATAAAAACAAAACAACTTAAAGAACACGATTATAAATGTGCAGAGTGTGAATACAAGACACACCACAAGTCAAAGTTAGAGAAACACATGAAGATAAAACATCTTAAAGAATATGATTACAAATGCGCAGAGTGTGAGTACAAGACGAACCTGAAGTCAACGTTAATACGACACATAAAAACAATACATCTTAAAGAATATGATTACAAATGCGTACAGTGTGAGTACAAGACACAACACAAGTCATGTTTAGAAAGCCACATAAAGGCAGTGCATCTTAAAGAATACGATTACAAATGCGCAGAGTGTGAGTACAAGACACAACAGAAGTCACTTTTAGAAGGACACATAAAGGCAGTGCATCTTAAAGAATACGATTACAAATGCGCAGAGTGTGAGTACAAGACACAACACAAGTCACTTTTAAAAGGACACCTAAAGACCGTGCATCTTAAAGAATATGATTACAAATGCGCAAAGTGTGAGTACAAGACACAGCGCAAGTCACATTTAGAAGGACACCTAAAGACCGTGCATCTTAAAATAAGAGATTATAAATGCGTAGTGTGTGAGTACAAGACAAATCACAAGTCAGAGTTAGTAAAACACATTAAAGCAAAACATCTTAAAGAACACGATTATAAATGTGCAGAGTGTGAGTACAAGACGAACGACAAGTCAATCTTAGTACGACACATAAAGACAAAACATCTTAGAGAACACGATTATAAATGCGCAGAGTGTGAGTACAAGACGAACGAGAAGTCAAAGTTAGTGGTACACATAAAAACAAAACATCTTAAAGAACACGATTATAAATGCGCAGAGTGTGAGTACAAGACGAACGAGAAGTCAAAGTTAGTACGACACATAAAAACAAAACATCTTAAAGAACGCAATTATAAATGCGCAGAGTGTGAGTACAAGACGAACGAGAAGTCAAAATTAGTACTACACATAAGAACAAAACATCTTAAAGAACACGATTATAAATGTGCGAAGTGTGAATACAAGACACACCACAAGTCAAATTTAGAGAAACACATAAAGATAAAACATCTTAAAGAAGACGATTATAAATGCGCAGAGTGTAAGTACAAGACGAACCACAAGTCAGTCTTAGTACGACACATAAAAACAAAACATCTTAAAGCAACTGTAAGGAATAACAATAAAGTGAAGAATACAAGATACACATTGTAA
- Protein Sequence
- MTGIKSYCCIQNVYKFYWNSFTFRDCAVPSAEVQDLEIEKRSFLRSKAKRWKSKIYKCTQCKFRTMYNAAFRYHTNEHYETKMYKCGICRRRYKTRESLETHVVKIHGDNAGRHVQNYSTCDSFKANIKNKKEGSAHSQDDKKQCSCSKCKFQTRNKCHLRTHIKIEHANRKYKCTHCEFKTYYRSYLEIHMKMKHLIEGYHKCRERQYQTNFRSSLEVHTKIKQLKQKNYKCAECEYKTNNRSCLKAHVKTKHLKEYDYKCVQCEYKTQHKSCLESHIKAVHLKEHDYKCAECKYKTQHKSCLERHIKTVHLKEYDYKCAECEYKTNEKSKLVRHIKTKHLKEHDYKCAECEYKTNEKSKLVRHIKTKHLKEHDYKCAECEYKTHHKSNLEKHMKIKHLKEYDYKCAECEYKTNLKSTLVRHIKTIHVKEYDYKCVQCEYKTQHKSCLESHIKAVHLKEYDYKCAECEYKTQHKSLLEGHLKTVHLKEYDYKCAECEYKTQHKSCLERHIKTVHLKEYDYKCAECEYKTNEKSKLVRHIKTKQLKEHDYKCAECEYKTHHKSKLEKHMKIKHLKEYDYKCAECEYKTNLKSTLIRHIKTIHLKEYDYKCVQCEYKTQHKSCLESHIKAVHLKEYDYKCAECEYKTQQKSLLEGHIKAVHLKEYDYKCAECEYKTQHKSLLKGHLKTVHLKEYDYKCAKCEYKTQRKSHLEGHLKTVHLKIRDYKCVVCEYKTNHKSELVKHIKAKHLKEHDYKCAECEYKTNDKSILVRHIKTKHLREHDYKCAECEYKTNEKSKLVVHIKTKHLKEHDYKCAECEYKTNEKSKLVRHIKTKHLKERNYKCAECEYKTNEKSKLVLHIRTKHLKEHDYKCAKCEYKTHHKSNLEKHIKIKHLKEDDYKCAECKYKTNHKSVLVRHIKTKHLKATVRNNNKVKNTRYTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -