Mmel179310.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melolontha melolontha
Gene Symbol
-
Assembly
GCA_935421255.1
Location
CAKXYX010002804.1:24310-26790[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.92 1.1e+02 7.0 4.9 1 23 42 64 42 64 0.98
2 25 0.19 22 9.2 1.2 1 23 70 93 70 93 0.96
3 25 0.0057 0.66 14.0 2.6 1 23 153 176 153 176 0.98
4 25 0.00094 0.11 16.4 2.2 1 23 182 205 182 205 0.98
5 25 0.00033 0.039 17.9 1.4 1 23 211 234 211 234 0.96
6 25 0.0033 0.38 14.7 3.6 1 23 240 263 240 263 0.98
7 25 0.00057 0.066 17.1 4.5 1 23 269 292 269 292 0.98
8 25 0.0011 0.12 16.3 1.4 1 23 298 321 298 321 0.98
9 25 0.013 1.5 12.8 2.3 1 23 327 350 327 350 0.98
10 25 0.00021 0.025 18.5 1.2 1 23 356 379 356 379 0.96
11 25 0.0056 0.65 14.0 1.5 1 23 385 408 385 408 0.98
12 25 0.0056 0.65 14.0 1.5 1 23 414 437 414 437 0.98
13 25 0.0021 0.24 15.3 2.6 1 23 443 466 443 466 0.98
14 25 0.0023 0.27 15.2 0.9 1 23 472 495 472 495 0.98
15 25 0.2 23 9.1 0.7 1 23 501 524 501 524 0.96
16 25 0.0018 0.21 15.5 3.3 2 23 531 553 530 553 0.94
17 25 0.0025 0.29 15.1 0.8 1 23 559 582 559 582 0.98
18 25 2.1 2.4e+02 5.9 3.4 1 23 588 611 588 611 0.95
19 25 0.00037 0.043 17.7 2.5 1 23 617 640 617 640 0.98
20 25 0.2 23 9.1 5.4 1 23 646 669 646 669 0.98
21 25 0.093 11 10.2 2.3 1 23 675 698 675 698 0.98
22 25 0.0019 0.22 15.5 4.4 1 23 704 727 704 727 0.98
23 25 0.00095 0.11 16.4 2.4 1 23 733 756 733 756 0.98
24 25 0.016 1.9 12.6 1.4 1 23 762 785 762 785 0.98
25 25 0.69 80 7.4 0.5 2 23 792 814 791 814 0.94

Sequence Information

Coding Sequence
ATGTTTAACCCGGATTCATTTATTTTCAGTTACTGCGTACTTCCTACGGCGGAGGATCACGGTGTAGAAGTAGAAAAGCGTTCATCTATAAGGAGCCGACTCAAGAGATGGAAGCGTGGAATATACAAATGTACGCAATGCAAGTTCAGTACAATGTACAACGCCGACTTCAGGCACCACACTAACGAACATTGCAAAGTGAAAATGTACAAATGCGGCATTTGTTGCAGAAGATATAGGGCGAAGGAATCTCTCCAGGCACACGTGGAAAAAATTCATGCTGGCGATGAAGGTAGAGATGTCCAAAAATACTCAACGTGTGACAATTTCAAAGCTAATATTAGAAATATAGAAGATAGATCTACACACTCGCACGATGGTGCAAAACAATGTCAATCCTCGAAATGCAAGTTGAAGATACATTATATGAGAATGAAACATCTCGACAAAACTAATTATAAATGCATGAAGTGTGAATACCAGACGAGATTTAAGTCAAATTTGAAATTACACATAAATGTAAAACATTTGAAGCAAAAGGATTATAAATGCTCAGAGTGTGAATATCAGACGAGCTTTAAGTCAAGTTTAAAAGCACACGTAAAGACAAAACACCTGGAACAAACTGATTATAAATGCATGGACTGTGGATACCGGACGAACTACAAGTCAAGTTTAGAAAGACACACAAAAGAAATACATCTGAAAAAAATCGATTATAAATGCATGCAGTGTGAATATAAGACGTGTCGCAAGTCAACCTTAGAAGAACACATAAAGACAATACATCTTAAAATAAGCGATTATAAATGCATGGAGTGTGAATACAAGACAAATCGCAAGTCACATTTAAAAGTACACATAAAAACGAAACATCTGAAACAAAGTGATTACAAATGCGCAGAATGTGAATACCAAACGAACTACAAGTCGTATTTAAAAGCGCACATAAATACAAAACATCTCAAACAAAGCGATTATAAATGCATGGAGTGTGAATTCAAGACGAACTTCAAGTCAAGTTTAAACCAACACATCAAGATAAAACATCTTAAATTAAACGATTATAAATGCATGGAGTGTGAATATATGACAAATACCAAGTCAAACTTAGAAAAACACATTAAGGCAAAACATCTTAGATCAAGCAATTACAAATGCATGGAGTGCGAATACCAGACGAACTTCAAGTCAAATTTGGAAATACACGTAAAGACAAAACATCTTAAGTTAAACGATTATAAATGCATGGAGTGTGAATACCAGACGAACTTCAAGTCAAATTTGGAAATACACGTAAAGACAAAACATCTTAAGTTAAACGATTATAAATGCATGGAGTGTGAATACCAGACGAACTTCAAGTCAAATTTGGAAAAACATATAAAGAGGAAACATCTTAAATTAAACGATTATAAATGCACGGAGTGTGAATACCAGACAAGCATCAAGCCAAATTTGAAAGTACACATAAAGACAAGACATCTTAAATTAAACGATTATAAATGCATTGAATGTGAATACCAGACGAACATCAAATCAAATTTGGAAGTACACATAAAGAGAAAACATCTTAAATTAAACGATTGTAAATGCATGGAGTGTGAATACCAAACGAGCAGCAAGTCAAATTTAGAAAGACACATGAAAGCGAAACATCTTAAACAAAAGGATTATAAATGCGCAGAGTGTGAATATCAGACGAGCTTTAACTCAAGTTTGAAGGCACATGTAATGACAAAACATGTTAAACAAGATGGTTATAAATGCATTGAGTGTGAATACAAGACAAATTGCAAGCCAAACTTGGAAAGACACATGAAAACAAAACATCTTGAATTAAGCGATTATAAATGCGTAGAGTGTGAATATAAGACAAATTACAAGTCAAATTTGGAAAAACATCTAAAGACAAAACATCTTAAATTAAACGATTATAAATGCATGGAGTGTAACTACCAGACGTATTGCAAGTCAAACCTAGAAACACACATGAAAACAAAACATCTTCAATTAAGCGATTACAAATGCATGGCGTGTGAATTCAAGACAAATTATAAGTCAAGTTTGGAAAAACACGTGAAGACAAGACATCTTAAATTAAGCGATCATAAATGCACGGAGTGTGAATACCAGACCAACTTCAAGTCAAATTTAGAGAAACACATAAAGACAAAACATCTTAAATTGAACGATTATAAATGCATGGAGTGTGAATACCAGACGAACTTCAAGTCAAATTTGGAGAAACACATAAAGACAAAACATCTTAAATTGAACGATTATAAATGCTTGGAGTGTGAATACCAAACGAACTTCAGGTCAAATTTGGAAATACACGTAAAGAGAAAACATCTTAAATTAAATGATATTAAATGCATGGAGTGTGAATACCAGACGAACATCAAATCAAATTTGGACAGACACGTGAAAGCAAAGCATCTGAACCAAAAGACGCAGACGAGCTTTAAGTCATGTTAA
Protein Sequence
MFNPDSFIFSYCVLPTAEDHGVEVEKRSSIRSRLKRWKRGIYKCTQCKFSTMYNADFRHHTNEHCKVKMYKCGICCRRYRAKESLQAHVEKIHAGDEGRDVQKYSTCDNFKANIRNIEDRSTHSHDGAKQCQSSKCKLKIHYMRMKHLDKTNYKCMKCEYQTRFKSNLKLHINVKHLKQKDYKCSECEYQTSFKSSLKAHVKTKHLEQTDYKCMDCGYRTNYKSSLERHTKEIHLKKIDYKCMQCEYKTCRKSTLEEHIKTIHLKISDYKCMECEYKTNRKSHLKVHIKTKHLKQSDYKCAECEYQTNYKSYLKAHINTKHLKQSDYKCMECEFKTNFKSSLNQHIKIKHLKLNDYKCMECEYMTNTKSNLEKHIKAKHLRSSNYKCMECEYQTNFKSNLEIHVKTKHLKLNDYKCMECEYQTNFKSNLEIHVKTKHLKLNDYKCMECEYQTNFKSNLEKHIKRKHLKLNDYKCTECEYQTSIKPNLKVHIKTRHLKLNDYKCIECEYQTNIKSNLEVHIKRKHLKLNDCKCMECEYQTSSKSNLERHMKAKHLKQKDYKCAECEYQTSFNSSLKAHVMTKHVKQDGYKCIECEYKTNCKPNLERHMKTKHLELSDYKCVECEYKTNYKSNLEKHLKTKHLKLNDYKCMECNYQTYCKSNLETHMKTKHLQLSDYKCMACEFKTNYKSSLEKHVKTRHLKLSDHKCTECEYQTNFKSNLEKHIKTKHLKLNDYKCMECEYQTNFKSNLEKHIKTKHLKLNDYKCLECEYQTNFRSNLEIHVKRKHLKLNDIKCMECEYQTNIKSNLDRHVKAKHLNQKTQTSFKSC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00990034;
90% Identity
-
80% Identity
-