Mmel189876.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010004191.1:14592-16487[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.16 19 9.4 4.1 1 23 13 35 13 35 0.98 2 20 0.022 2.5 12.1 2.6 1 23 41 64 41 64 0.96 3 20 0.66 77 7.5 2.9 2 21 101 122 101 123 0.91 4 20 0.98 1.1e+02 6.9 4.3 1 23 131 154 131 154 0.96 5 20 0.0011 0.13 16.2 3.3 1 23 160 183 160 183 0.98 6 20 0.02 2.4 12.2 0.1 5 23 193 212 191 212 0.96 7 20 0.00033 0.038 17.9 2.2 1 23 218 241 218 241 0.98 8 20 0.18 21 9.2 0.3 1 23 247 270 247 270 0.96 9 20 0.0015 0.17 15.8 3.8 1 23 276 299 276 299 0.96 10 20 0.0002 0.023 18.6 2.7 1 23 305 328 305 328 0.98 11 20 0.00066 0.077 16.9 0.4 1 23 334 357 334 357 0.95 12 20 0.00073 0.085 16.8 4.4 1 23 363 386 363 386 0.98 13 20 0.0013 0.15 16.0 1.2 1 23 392 415 392 415 0.98 14 20 0.00088 0.1 16.5 0.7 1 23 421 444 421 444 0.96 15 20 0.0015 0.17 15.8 3.8 1 23 450 473 450 473 0.96 16 20 0.00041 0.048 17.6 0.7 1 23 479 502 479 502 0.98 17 20 9.5e-05 0.011 19.6 2.4 2 23 509 531 508 531 0.96 18 20 0.0002 0.023 18.6 0.2 1 23 537 560 537 560 0.98 19 20 0.0028 0.32 14.9 2.7 1 23 566 589 566 589 0.98 20 20 0.0014 0.16 15.9 0.7 1 23 595 618 595 618 0.98
Sequence Information
- Coding Sequence
- ATGAGAAGCAAAGTCCATAGATGGAAACGTGAAATATACAAATGTACGCGATGCAAGTTCAGAACAGTGTACAATGCGGACCTCAGACACCACACTAACGAGCACTACATGGTGAAAATGTACAAGTGTGGATCCTGTCACAGAAGATACAAGGCGAAGACATCTCTCCAGGCGCACGTGGAAAAAAATCATTTTGACAATGAAGGAGGAGATGTCGAGAAACATTCTAGATGTGACTATTTCATAACTAATACTAGGAATATGAAAAAGAGATCTCCACATTTACATGTTGGTGGAAGACGATGTCAATTCTCGAAATGCAAATTTCAAGTAAAGAGAAAATATCACTTAAAGTCACATATAAAAATAAGACAACCGAGCAGAGGAAAATATAAGTGCGCACATTGCGAGTTTAAGACATACTACAGGTCTTATTTAGAAATGCACAGTAATATGAAACATCTCATGGACGGTTATTTTAAATGCAGGGAGTGTGAATTCAAGACAAGCTACAAGAATAATTTAGAAAGACACATAAAAACGAAACATCTGAAACAAAAGAATTATAAATACGCAGAATGTGAATACAAGACAAACAACAAGTATAATTTAGAGAAACACCTAAATACAGTACATCTTAAAATAAGAGATTATATATGTACTGAATGTGAATACAAGGCAAGCCACAAGTCTGAGTTAGTAAAACACATGAAGACAAGGCATCTTAAAATAACTTATTATAAATGTGCGCAATGTGAATACAAGACAAACAACAAGGGCATTTTACAGAATCACATAAAGGCAGTGCATTTTAAAATAAAAGATTATAAATGTGCTGATTGTGAATACAAGACAAACCATAAGTATCATTTGGAGAAACACATCAAGGCAGTGCATCTTAAAATAAGGGATTATAAATGCATGGAGTGTGAATTCAAGACAAGTCACAAATCAGATTTAGAAAGACACATAAAGACAATACATCTCAAAGTAGCCGATTATAAATGCGCAGAGTGTGAATACAAGACAAACTACAAGTCAAATTTAGAAAGACACGTAATGGCAATACATCTTACAATAAAAGATTATAAATGCGCACACTGTGAATACAAGACAAACTACAAGTCAAATTTAGAAAGACACGTAAAGACAAAACATCTAAAAAAAAGCGATTATAAATGCGCGGAATGTGAATACCAGACAAACAACAAGTATTATTTAGAGATTCACATAAAGACGAAGCATCTTGAAATAAGCAATTATAAGTGCGCAGATTGTGAATACAAGACAAACAACAAGCGCAGCTTACAGAATCACATAAAGGCAGTGCATCTTAAAATAAGAGATTATAAATGTGCAGATTGTGAATACAAGACAAACCATAAGTATCATTTAGAAAAACACATCAAGGCAGTGCATCTTAAAATAAGGGATTATAAATGCATGGAGTGTGAATTCAAGACAAGTGGCAAATCAGATTTAGAAAGACACATAAAGACAATACATCTCAAAGTAGCCGATTGTAAATGCGCAGACTGTGAATACAAGACAAGTCGCAAATCAGATTTAGAAAGACACATAAAGACAATACATCTCAAAGTAGCCGATTATAAATGCGCAGACTGTGAATACAAGACAAGTCGCAAACCAGATTTAGAAATACACATAAAGACAATACATCTTAAAGTAGCCGATTATAAATGCACAGAGTGTGAATTCAAGACAAACTATAAGTCAAGTTTACAAATGCACACAAAGACAATACATCTTAAGATAAGGGCTTTTAAGTGTGTAGAGTGTGAATACAACACAAACTCGAACAAAAGTCTAGCAAAACACATAAAAACAATACATCTTACAATAAGAGATTATAAATGTTGTAACGAACCCCGTTAG
- Protein Sequence
- MRSKVHRWKREIYKCTRCKFRTVYNADLRHHTNEHYMVKMYKCGSCHRRYKAKTSLQAHVEKNHFDNEGGDVEKHSRCDYFITNTRNMKKRSPHLHVGGRRCQFSKCKFQVKRKYHLKSHIKIRQPSRGKYKCAHCEFKTYYRSYLEMHSNMKHLMDGYFKCRECEFKTSYKNNLERHIKTKHLKQKNYKYAECEYKTNNKYNLEKHLNTVHLKIRDYICTECEYKASHKSELVKHMKTRHLKITYYKCAQCEYKTNNKGILQNHIKAVHFKIKDYKCADCEYKTNHKYHLEKHIKAVHLKIRDYKCMECEFKTSHKSDLERHIKTIHLKVADYKCAECEYKTNYKSNLERHVMAIHLTIKDYKCAHCEYKTNYKSNLERHVKTKHLKKSDYKCAECEYQTNNKYYLEIHIKTKHLEISNYKCADCEYKTNNKRSLQNHIKAVHLKIRDYKCADCEYKTNHKYHLEKHIKAVHLKIRDYKCMECEFKTSGKSDLERHIKTIHLKVADCKCADCEYKTSRKSDLERHIKTIHLKVADYKCADCEYKTSRKPDLEIHIKTIHLKVADYKCTECEFKTNYKSSLQMHTKTIHLKIRAFKCVECEYNTNSNKSLAKHIKTIHLTIRDYKCCNEPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -