Mmel064406.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000534.1:2262148-2263977[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00041 0.048 17.6 1.8 1 23 19 42 19 42 0.98 2 18 0.01 1.2 13.2 1.7 1 23 112 135 112 135 0.98 3 18 0.0014 0.17 15.8 1.0 1 23 141 164 141 164 0.98 4 18 3.4e-05 0.0039 21.0 0.4 1 23 170 193 170 193 0.96 5 18 0.0004 0.046 17.6 1.1 1 23 199 222 199 222 0.98 6 18 0.0022 0.25 15.3 2.0 1 23 228 251 228 251 0.98 7 18 0.098 11 10.1 0.4 1 23 257 280 257 280 0.98 8 18 0.00049 0.057 17.3 0.8 1 23 286 309 286 309 0.98 9 18 5.1e-05 0.006 20.4 1.4 1 23 315 338 315 339 0.97 10 18 0.0047 0.55 14.2 0.9 1 23 344 367 344 367 0.96 11 18 0.053 6.1 10.9 1.5 1 23 373 396 373 396 0.97 12 18 0.00044 0.052 17.5 0.8 1 23 402 425 402 425 0.96 13 18 0.0027 0.32 15.0 0.6 1 23 431 454 431 454 0.96 14 18 0.00025 0.029 18.3 0.8 1 23 460 483 460 483 0.98 15 18 0.0011 0.12 16.3 1.0 1 23 489 512 489 512 0.98 16 18 0.00048 0.055 17.4 0.8 1 23 518 541 518 541 0.98 17 18 6.6e-05 0.0077 20.1 1.0 1 23 547 570 547 570 0.98 18 18 0.0049 0.57 14.2 1.8 1 23 576 599 576 600 0.95
Sequence Information
- Coding Sequence
- ATGAACAACGACGACTTCAGACACCACACTAACGAGCATTGCAGGGTGAAAATGTACAAATGTGGAATTTGTCACAGAAGATACAAGGCAAAGGGATCTCTCAAGGCGCACGTGAAAAAAATCCATGCTGACTTAGTAGGAAGAGATGCCAAAAAATACTTTGCATGTGACTACTTCAAAGACAATATTAAAAAAATAAAAGAAAGATGCCCACGTTTATCTGATGATGCAAAACAAGTTTGCGTTTCGAGCACGGCGAAACGCAAACTTCAAACAGGGGACAAATGTCACTTAAAATCACTTATAAACGTGAAACATCTGAACAGAGGCAAATATAAGTGCGAAAATTGCGAATTCAAGACATATTACAGGACTTATTTGGAAATGCACATGAGAATTATACATTTTATGGAAAGTAATTATAAATGCGTAGAATGTGAATTCAACACAAGCTACAAGGCAAGTTTACAAAGACACATAAAAGTAAAACACCTTAAATTAAACAATTATACATGCGGAGAGTGTGAATACAAGACAAGTAGCAAGTCAAATTTAGAAAGACACATAAAGGCAATACATCTTAAATTAAGCGATTATAAATGCGGAGAGTGTAAATTCAGGACAAATGACAAGTCAACTTTAGCAAGACACGTGAAGACGATACATCTTAAATTAAGCGATTATAAATGCGGAAAGTGCGAATTCAAGACAAATGACAAGTCATATTTAGGAAAACACATGAAGAGAATACATCTTAGTTTAAGCGATTACAAATGCGGAGGCTGTGAATTCAGGACAAATGACAGGTTAACTTTAGGAAGACACGTAAAGACAATACATCTTAAATTAAGCGATTATAAATGCGGAGAGTGTGAATTCAAGACAAATGACAAGTCGTATCTAGGAAAACACATAAGGACAATACATCTTAAATTCAGCGATTATAAATGCGGAGAATGTGATTACAAGACAAACTACAACTCAAATTTAGCAAGGCACATAAAGGTAATACATCATAAAGTAATCGATTATAAATGCGGAGAGTGTGAATACAAGACAAACTACAAGTCAGCTTTAGACAAACACATAAAGGCAAAACATCTTAAAGTAAGCGATCATGAATGCGGAGATTGTGAATTCAAGACAAAAAGTAAGTTAACTTTAGGAAGACACATAAAGACAATACATTTTAAATTAAGCGATTATAAATGCGGCGACTGTGAATACAAGACAAATTACAAATCAACTTTAGAAAAGCACATAAAGGCAATACATCTTAAATTACGCGATTATAGATGCATGGAGTGCGAATACCAGACAAACTACAAATCAGCTTTACAAAAACACATAAAGGCCATACATCTTAAATTAAGCGATTATAAATGCGAAGAGTGTGAATTCAGGACAAATGACAAGTCAACTTTAGCAAGACACGTAAAGACAATACATCTTAAACTAAATGTTTATAAATGCGGAGAGTGCGAATTCAAGACAAGTGACAAGTCATATTTAGGAAAACACATAAAGAGAATACATCTTAAATTAAGCGATTATAGATGCGAAGAGTGCGAATTCAGGACAAACGACAAGTCAACTTTAGCAAAACACGTAAAGACAATACATCTTAAATTAAGCGATTATAAATGCGGAGAGTGTGAATACGAGACAAACTACAACTCAAATTTAGAAAGACACATAAAGACAAAACATCTTAAATTAAGTGATTATAAGTGCATGGAGTGTGAATACCAAACGAACTACAACTCAAATTTAGAAAGACACGTAAAGGCATTACATCATAAAGTAATCGATTATAAATACGAAGTGTGA
- Protein Sequence
- MNNDDFRHHTNEHCRVKMYKCGICHRRYKAKGSLKAHVKKIHADLVGRDAKKYFACDYFKDNIKKIKERCPRLSDDAKQVCVSSTAKRKLQTGDKCHLKSLINVKHLNRGKYKCENCEFKTYYRTYLEMHMRIIHFMESNYKCVECEFNTSYKASLQRHIKVKHLKLNNYTCGECEYKTSSKSNLERHIKAIHLKLSDYKCGECKFRTNDKSTLARHVKTIHLKLSDYKCGKCEFKTNDKSYLGKHMKRIHLSLSDYKCGGCEFRTNDRLTLGRHVKTIHLKLSDYKCGECEFKTNDKSYLGKHIRTIHLKFSDYKCGECDYKTNYNSNLARHIKVIHHKVIDYKCGECEYKTNYKSALDKHIKAKHLKVSDHECGDCEFKTKSKLTLGRHIKTIHFKLSDYKCGDCEYKTNYKSTLEKHIKAIHLKLRDYRCMECEYQTNYKSALQKHIKAIHLKLSDYKCEECEFRTNDKSTLARHVKTIHLKLNVYKCGECEFKTSDKSYLGKHIKRIHLKLSDYRCEECEFRTNDKSTLAKHVKTIHLKLSDYKCGECEYETNYNSNLERHIKTKHLKLSDYKCMECEYQTNYNSNLERHVKALHHKVIDYKYEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -