Mmel076882.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000645.1:84937-86740[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.18 21 9.3 0.3 5 23 2 21 1 21 0.95 2 19 0.0066 0.77 13.8 1.3 1 23 27 50 27 50 0.96 3 19 5e-05 0.0058 20.5 1.2 1 23 56 79 56 79 0.98 4 19 0.00015 0.018 18.9 1.0 1 23 85 108 85 108 0.98 5 19 0.00072 0.084 16.8 3.5 1 23 114 137 114 137 0.98 6 19 7.5e-05 0.0087 19.9 2.3 1 23 143 166 143 166 0.98 7 19 1.5e-05 0.0018 22.1 0.4 1 23 172 195 172 195 0.98 8 19 0.0035 0.41 14.6 1.6 1 23 201 224 201 224 0.95 9 19 7.5e-05 0.0087 19.9 2.3 1 23 230 253 230 253 0.98 10 19 1.3e-05 0.0016 22.2 0.9 1 23 259 282 259 282 0.98 11 19 6.1e-05 0.0071 20.2 1.6 1 23 288 311 288 311 0.98 12 19 1.5e-05 0.0018 22.0 1.3 1 23 317 340 317 340 0.98 13 19 0.062 7.2 10.7 4.9 1 23 346 369 346 370 0.95 14 19 0.0018 0.22 15.5 1.8 2 23 376 398 375 398 0.96 15 19 4.2 4.9e+02 4.9 0.3 13 23 400 411 399 411 0.93 16 19 7.5e-05 0.0087 19.9 0.5 1 23 417 440 417 440 0.98 17 19 2.7 3.2e+02 5.5 0.2 13 23 454 465 450 465 0.90 18 19 0.15 17 9.5 0.2 9 23 480 495 478 495 0.90 19 19 4.1 4.7e+02 5.0 0.4 5 20 505 520 504 522 0.91
Sequence Information
- Coding Sequence
- ATGGAGTGTGATTTCAAGGCAAATCGCAAGTCGCGCTTAGAAAGACACATAAAGACAATCCATCTTAAAGTAGCCGATTATAAATGCGCAGAGTGTGAATACAAGACAAACCACAAGCTAAATTTAGAAAGACACGTGAAGGCAATACATCTTAAAGTGACCGATTATAAATGCGCAGAGTGTGAATACAAGACAAACTACAAGTCAAATTTGGAAAGTCACATGAAGACAGTACATCTTAAAGTGACCGATTATAAATGCGGGGAGTGTGAATACAAGACGAACTACAAGTCAAATTTAGAAAATCACGTAAAGACAATACATCTTAAAGTAACTGATTATAAATGCGAAGTGTGTGAATTCAAGACAAACCATAAGTCAAGTTTAGAAAGACACACAAAGACAATACATCGTAAAGTAACCGATTATAAATGCGCAGAGTGTGAATACAGGACAAACCATAAGTCAAGCTTAGAAAGACACATAAAGACAATACATCTTAAAGTAACCGATTATAAATGCGCAGAGTGTGAATATGAGACCAGCAATAAGTCAAATTTAGAAAATCACATAAAGACAATACATCTTAAAGTAGCCGATTATAATTGCGCAGAGTGTGAATACAGGACAAACCATAAGTCAAGTTTAGAAAGACATACAAAGGCAATACATCGTAAAGTAACCGATTATAAATGCGCAGAGTGTGAATACAGGACAAACCATAAGTCAAGTTTGGAAAGACACATAAAAACAATACATCTTAAAGTAACCGATTATAAATGCGTAGAGTGTGAATACAAGACAAGTAATAAGTCAAATTTAGAAAATCACATAAAGACAATACATCTTAAAGTAGCCGATTATAAATGCGCAGAGTGTGAATACAAAACAAACTACAAGTCAAATTTAAAAAATCATATAAAGACAATACATCTTAAAGTGACCGAATATAAATGCCCAGAGTGTGATTACAAGACCAACTACAAGTCAAGTTTAAAAATACACCTGAAGACAATACATCTTAACGTAACGGATTATAAATGCGTGGAGTGTGAATATAAGACTAATATGAAGTCTCATTTGAAACAACACGTAAAGGCAAAACATCATAAAATAAGAGATCAGAAATGTATGCAGTGTGAATTCAAGACAAGTCGCAAATCAGATTTAGAAAGACACATAAAAGTAAGACATCTTAAATCAAGTTTAGAAAGACACATAAAGACAATACATCTTAAAATAACCGATTATAAATGCGCAGAGTGTGAATACAAGACAGGCAATAAGTCAAATTTAGAAAATCACATAAAGACAATACATCGTAAAGTAGCCGATTATAAATGCGCAGTGACAAACCTTAAGTCAAGTTTAGAAAGACACATAAAGACAATACATCTTCAAATAATCGATTATAAATGCACAACAGAGTCTGAATACAAGACAAGCAATAAGTCAAATTTAGAAAATCACATAAAGACAATACATCTTAAAGAGACCGATTATAAAATCGCAGAGTGTGAATTCAAGACAAACCATAAGTCAAGTTTAGAAAGACACAAAGATAAAACATCTTAA
- Protein Sequence
- MECDFKANRKSRLERHIKTIHLKVADYKCAECEYKTNHKLNLERHVKAIHLKVTDYKCAECEYKTNYKSNLESHMKTVHLKVTDYKCGECEYKTNYKSNLENHVKTIHLKVTDYKCEVCEFKTNHKSSLERHTKTIHRKVTDYKCAECEYRTNHKSSLERHIKTIHLKVTDYKCAECEYETSNKSNLENHIKTIHLKVADYNCAECEYRTNHKSSLERHTKAIHRKVTDYKCAECEYRTNHKSSLERHIKTIHLKVTDYKCVECEYKTSNKSNLENHIKTIHLKVADYKCAECEYKTNYKSNLKNHIKTIHLKVTEYKCPECDYKTNYKSSLKIHLKTIHLNVTDYKCVECEYKTNMKSHLKQHVKAKHHKIRDQKCMQCEFKTSRKSDLERHIKVRHLKSSLERHIKTIHLKITDYKCAECEYKTGNKSNLENHIKTIHRKVADYKCAVTNLKSSLERHIKTIHLQIIDYKCTTESEYKTSNKSNLENHIKTIHLKETDYKIAECEFKTNHKSSLERHKDKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -