Mmel059008.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000494.1:54959-56968[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.21 24 9.1 0.1 6 23 34 52 32 52 0.93 2 21 0.13 15 9.7 3.5 1 23 59 82 59 82 0.98 3 21 0.0024 0.28 15.1 2.3 1 23 88 111 88 111 0.98 4 21 1.5 1.7e+02 6.4 1.3 1 23 117 140 117 140 0.97 5 21 0.0038 0.44 14.5 0.8 1 23 146 169 146 169 0.96 6 21 0.00087 0.1 16.5 1.5 1 23 175 198 175 198 0.98 7 21 0.0036 0.42 14.6 0.9 1 23 204 227 204 227 0.96 8 21 0.00031 0.036 18.0 1.4 1 23 233 256 233 256 0.98 9 21 0.0019 0.22 15.5 2.7 1 23 270 293 270 293 0.98 10 21 0.00014 0.016 19.1 1.5 1 23 299 322 299 322 0.98 11 21 0.00031 0.036 18.0 1.4 1 23 328 351 328 351 0.98 12 21 0.076 8.9 10.4 1.9 1 23 357 380 357 380 0.98 13 21 0.00014 0.016 19.0 1.2 1 23 386 409 386 409 0.98 14 21 0.00087 0.1 16.5 1.5 1 23 415 438 415 438 0.98 15 21 0.0036 0.42 14.6 0.9 1 23 444 467 444 467 0.96 16 21 0.00016 0.019 18.8 2.2 1 23 473 496 473 496 0.98 17 21 0.0019 0.22 15.5 2.7 1 23 510 533 510 533 0.98 18 21 0.00014 0.016 19.1 1.5 1 23 539 562 539 562 0.98 19 21 0.00031 0.036 18.0 1.4 1 23 568 591 568 591 0.98 20 21 0.076 8.9 10.4 1.9 1 23 597 620 597 620 0.98 21 21 6.6e-05 0.0077 20.1 1.9 1 23 626 649 626 649 0.98
Sequence Information
- Coding Sequence
- ATGTATAGAGCCGACTTCAGGCATCACACTAACGAGCATTACCAGGTGAAAATGTACAGGAAAAAACATCTGAAACAAAAGAATTACAAATGGGCACAGTGTGAATTCAAGTCAGTAAACAAGTCATATTTAGAAAAACACATACAAACAATACATCTTCAAGGACATGATTATTATAAATGCGTAGAGTGTGAACACAAGACAAATAACAAGTCGCGTTTAAAAGGGCACGTGAAAACTAAACATCTTAAAGAGCACGATTATAAATGCGCCGAGTGTGAATACAAGACAAATGACAAGTGGCATTTAAAAGTACACGTGAAAACGAAACATCTTAAAGAATACGATTTTAAATGCGCAGCGTGTGAATACAAGACAAATATTAAGTTAAATTTAAAAACGCATGTGAAAACGAAACATCTTAAAGAACACGATTATAAATGTGCAAAGTGTGAATATAAGACAAACAGGAAGCCGGATTTACAAAAACACGTGAAGGGAATACATCTTAAAGAACACGATTATAAATGCGCCGATTGTGAATACAAGACAAATGACAAGTGGCATTTAAAAGTACATGTGAAAACGATACATCTTAAAGAACACGATTATAAATGCGCCGATTGTGAATACAAGACAAACTACAAGTTTAGTTTAGAAAAACACATAAAGGCAATACATCTTAAAGAACACGATTATAAATGCACCGAGTGTGAATACAAAACGAATAACAAGTCAAATCTATTAATACACGCAAAAACACAACATCTTAAAGAACACAGTTATAAACATCTTAAAGAACACGATTATAAATGCGCCGTGTGTGAATACGAGACAAATAACAAGTCACATTTAAAATTACACGTGAAAACTAAACATCTTAAAGAACGCGATTATAAATGCGCAGAGTGTGAATACAAAACGAATAACAAGTCAAATTTAGTAAAACACATAAAATCAAAACATCTTAAAGAACACGATTATAAATGCACCGAGTGTGAATACAAAACGAATAACAAGTCAAATCTATTAATACACGCAAAAACACAACATCTTAAAGAATACGACTATAAATGCGTAGAGTGTGAATACAAGACAAATGATACGTCTCGTTTCAAGGCACACGTGAAAACTAAACATCTTAAAGAACGCGATTATAAATGCGCAGAGTGTGAATACAAGACAAATGACAAGTCAAATTTAGTAAAACACATAAAATCAAAACATCTTAAAGAACGCGATTATAAATGCGCCGATTGTGAATACAAGACAAATGACAAGTGGCATTTAAAAGTACATGTGAAAACGATACATCTTAAAGAACACGATTATAAATGCGCCGATTGTGAATACAAGACAAACTACAAGTTTAGTTTAGAAAAACACATAAAGGCAATACATCTTAAAGAACACGATTATAAATGCACCAAGTGTGACTACAAAACGAATAACAAGTCAAATCTATTAATACACGCAAAAACACAACATCTTAAAGAACACAGTTATAAACATCTTAAAGAACACGATTATAAATGCGCCGTGTGTGAATACGAGACAAATAACAAGTCACATTTAAAATTACACGTGAAAACTAAACATCTTAAAGAACGCGATTATAAATGCGCAGAGTGTGAATACAAAACGAATAACAAGTCAAATTTAGTAAAACACATAAAATCAAAACATCTTAAAGAACACGATTATAAATGCACCGAGTGTGAATACAAAACGAATAACAAGTCAAATCTATTAATACACGCAAAAACACAACATCTTAAAGAATACGACTATAAATGCGTAGAGTGTGAATACAAGACAAATGATACGTCTCGTTTCAAGGCACACGTGAAAACTAAACATCTTAAAGAACACGACTATAAATGCACAGAGTGTGAATACAAGACAAATGACAAGTCAAATTTAGTAAAACACATAAAATCAAAACATCTAAAGAACACGATTTCAAATGCGCAGAGTGTGAGTACAAGACGAACCGCAAGTCAAATTTAG
- Protein Sequence
- MYRADFRHHTNEHYQVKMYRKKHLKQKNYKWAQCEFKSVNKSYLEKHIQTIHLQGHDYYKCVECEHKTNNKSRLKGHVKTKHLKEHDYKCAECEYKTNDKWHLKVHVKTKHLKEYDFKCAACEYKTNIKLNLKTHVKTKHLKEHDYKCAKCEYKTNRKPDLQKHVKGIHLKEHDYKCADCEYKTNDKWHLKVHVKTIHLKEHDYKCADCEYKTNYKFSLEKHIKAIHLKEHDYKCTECEYKTNNKSNLLIHAKTQHLKEHSYKHLKEHDYKCAVCEYETNNKSHLKLHVKTKHLKERDYKCAECEYKTNNKSNLVKHIKSKHLKEHDYKCTECEYKTNNKSNLLIHAKTQHLKEYDYKCVECEYKTNDTSRFKAHVKTKHLKERDYKCAECEYKTNDKSNLVKHIKSKHLKERDYKCADCEYKTNDKWHLKVHVKTIHLKEHDYKCADCEYKTNYKFSLEKHIKAIHLKEHDYKCTKCDYKTNNKSNLLIHAKTQHLKEHSYKHLKEHDYKCAVCEYETNNKSHLKLHVKTKHLKERDYKCAECEYKTNNKSNLVKHIKSKHLKEHDYKCTECEYKTNNKSNLLIHAKTQHLKEYDYKCVECEYKTNDTSRFKAHVKTKHLKEHDYKCTECEYKTNDKSNLVKHIKSKHLKNTISNAQSVSTRRTASQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -