Mmel141232.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melolontha melolontha
Gene Symbol
-
Assembly
GCA_935421255.1
Location
CAKXYX010001525.1:907558-909939[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.045 5.3 11.1 3.0 1 23 21 43 21 44 0.95
2 25 0.00021 0.025 18.5 1.2 2 23 50 72 49 72 0.94
3 25 0.013 1.6 12.8 3.8 1 23 126 149 126 149 0.98
4 25 0.15 18 9.5 4.0 1 23 155 178 155 178 0.98
5 25 0.018 2.1 12.4 2.5 1 23 184 207 184 207 0.97
6 25 0.0051 0.59 14.1 4.2 1 23 213 236 213 236 0.98
7 25 0.00017 0.02 18.8 0.6 1 23 242 265 242 265 0.98
8 25 0.9 1e+02 7.1 5.4 1 23 271 294 271 294 0.98
9 25 0.0011 0.13 16.2 1.3 1 23 300 323 300 323 0.98
10 25 0.00044 0.051 17.5 1.3 1 23 329 352 329 352 0.98
11 25 0.0057 0.66 14.0 0.7 1 23 358 381 358 381 0.98
12 25 0.014 1.6 12.8 2.5 1 23 387 410 387 410 0.98
13 25 0.00038 0.044 17.7 1.2 1 23 416 439 416 439 0.98
14 25 0.018 2.1 12.4 1.2 1 23 445 468 445 468 0.98
15 25 0.00038 0.044 17.7 1.2 1 23 474 497 474 497 0.98
16 25 0.041 4.7 11.3 3.7 1 23 503 526 503 526 0.98
17 25 0.0014 0.17 15.8 1.7 1 23 532 555 532 555 0.98
18 25 0.17 20 9.3 4.6 1 23 561 584 561 584 0.98
19 25 0.0017 0.2 15.6 1.3 1 23 590 613 590 613 0.98
20 25 0.96 1.1e+02 7.0 3.3 1 23 619 642 619 642 0.97
21 25 0.0024 0.28 15.1 1.8 1 23 648 671 648 671 0.98
22 25 0.98 1.1e+02 6.9 9.0 1 23 677 700 677 700 0.98
23 25 0.0014 0.16 15.9 1.6 1 23 706 729 706 729 0.98
24 25 0.0008 0.093 16.7 1.3 1 23 735 758 735 758 0.98
25 25 0.00019 0.023 18.6 1.3 1 23 764 787 764 787 0.98

Sequence Information

Coding Sequence
ATGTCAGAAGTAAAAAGCTGTTCATCTCTGCCAAACAGGCACAAAACACGCCAGCGCACATTCAAATGTTCGCAATGCAAGTACAAATCACCGTACAGAGCCAACTTAAGGAATCACGCTAATGAGCATCATCAAGTGAAAACATGCAGATGTGGAATCTGTCCCAGGAGATTCAACACAAAGGAATCTCTCAAGGCACATGTGGAAAAAATACATATTACCATCGAACGAAAAGAATCGGAACAATGCTTTACGTATAACTATTTAAAAGCTAATGCCAAAAGCGCAATAAAAAGACCTTTAAACACGTGTAAGGGAAATCGACTTACAAACAACAATTCAAACATAAACTTAAAACAACTTAGAGAAGGTGATTATCAATGCGTAGAGTGTGAATATAAAACAAGTTACAAACAGCATTTGAAAATGCATACAAAAACAATACATCTAAAATATTACGATTATACATGCGCGGAGTGTGAATATAAGACAAACAACAAAAGATGTTTAGAATTACATACCAAAACAAAACATCTTAATGTAAGCGATTATAAGTGCATTGAATGTGGATACAAGACAAACTACAAAAGAAACTTTCAAGTACACATCAAAACTAAACATCTTAAAGTAAGCGATTATAAATGCGTGGAATGTGAATACAACACAAATAACAAACATGATTTCAATAGGCATATAAAAACAAAACATCTAGGGGAACACGATTATAAGTGCATGGAATGTGAATACGAGACAAACGACAAAAGCAATTTAGAAGTACACATCAAGACGAAACATCTTAAAGTAAGTGATTATAAATGCGTGGAGTGTGAATACAAGACAAACAACAAACATTTTTTCGAAATGCATACAAAAACAAAACATCTAAAGGTACACGATTATAAATGCGTGGAGTGTGAATACAAGACAAACTACAAAAGAAATTTAGAAGTACACATCAAAACGAATCATCTTAAAGTAAGCGATTATAAATGCGTAGAGTGTGAATACAAGACAAACAACAAAAGAAATTTAGAAGTACACATCAAAACGAAACATCTAAAGGTACACGATTATAAATGCGTGGAGTGTGAATACAAGACAAATTACAAAATAGATTTAGAAGTACACATCAAAACGAAACATCTTAAAGTAAGCGATTATAAATGCGTGCAGTGTGAATACAAGACAAATTACAAAATGGATTTAGAAAAACACTTAAAAACGAAACATCTTAAAGTTAGTGATTATAAATGCGTGGAGTGTGAATACAAGACAAACAACAAAACAAATTTAGAAGTACACATCAAAACGAAACATCTTAAAGTTAGTGATTATAAATGCGTGGCGTGTGAATATAAGACAAACTACAAAACAAATTTAGAAGTACACATCAAAACGAAACATCTTAAAGTTAGTGATTATAAATGCGTGGAGTGTGAATACAAGACAAACAACAAAACTAATTTAGAAGTACACATCAAAACGAAACATCTTAAAGTTAGTGATTATAAATGCGTGGAGTGTGAATACCAGACAAACGACAAAAAACTCTTCAAAAAACATACAAAAACAAAACATCTAAAGGAACACGATTATAAATGCCTGGAGTGTGAATACAAGACAAACTATAAAACAAATTTAGAAGTACACATCAAAACGAAACATCTTAAAGTAAGCGATTATAAATGCGTGGAATGTGAATACAAGACAAATTTCAAACACCGTTTGAAAATACATATAAAAACAAAACATCTAAAGGAACATGATTATAAATGCATGGACTGTGAATACAAGACAAATTACAACAAAGATTTAGAAGCACACATCAAAACCAAACATCTTAAAGTAAGCGATTATAAATGCGTGGAATGTGAATACAAGACAAATTTCAAACACCGTTTGGAAATACATGTAAAATCAAAACATCTAAAGGAACATGATTATAAATGCATGGACTGTGAATACAAGACAAATTACAACAAAGATTTACAAGTACACATCAAAACCAAACATCTTAAAGTAAGCGATTATAAATGCATGAAATGCGAATACAACACGAATAAAAAACATCATTTTAAGATGCATATAAAAACAAAACATCTAAAGGAACACGATTATAAATGCGTGGAGTGTGAATACAAGACAAACTACAAAAGAAATTTAGAAGTACACATCAAAACGAAACATCTTAAAGTTAATGATTATAAATGCGTGGAGTGTGAATACAAGACAAACAACAAAACTAATTTAGAAGTACACATCAAAAGGAAACATCTTAAAGTTAGTGATTATAAATGCGTGGAGTGTGAATACAAGACAAGCAACAAAAGAAATTTAGAAGTACACATCAAGACGAAACATCTTAAAGTAAGCGATTATTAA
Protein Sequence
MSEVKSCSSLPNRHKTRQRTFKCSQCKYKSPYRANLRNHANEHHQVKTCRCGICPRRFNTKESLKAHVEKIHITIERKESEQCFTYNYLKANAKSAIKRPLNTCKGNRLTNNNSNINLKQLREGDYQCVECEYKTSYKQHLKMHTKTIHLKYYDYTCAECEYKTNNKRCLELHTKTKHLNVSDYKCIECGYKTNYKRNFQVHIKTKHLKVSDYKCVECEYNTNNKHDFNRHIKTKHLGEHDYKCMECEYETNDKSNLEVHIKTKHLKVSDYKCVECEYKTNNKHFFEMHTKTKHLKVHDYKCVECEYKTNYKRNLEVHIKTNHLKVSDYKCVECEYKTNNKRNLEVHIKTKHLKVHDYKCVECEYKTNYKIDLEVHIKTKHLKVSDYKCVQCEYKTNYKMDLEKHLKTKHLKVSDYKCVECEYKTNNKTNLEVHIKTKHLKVSDYKCVACEYKTNYKTNLEVHIKTKHLKVSDYKCVECEYKTNNKTNLEVHIKTKHLKVSDYKCVECEYQTNDKKLFKKHTKTKHLKEHDYKCLECEYKTNYKTNLEVHIKTKHLKVSDYKCVECEYKTNFKHRLKIHIKTKHLKEHDYKCMDCEYKTNYNKDLEAHIKTKHLKVSDYKCVECEYKTNFKHRLEIHVKSKHLKEHDYKCMDCEYKTNYNKDLQVHIKTKHLKVSDYKCMKCEYNTNKKHHFKMHIKTKHLKEHDYKCVECEYKTNYKRNLEVHIKTKHLKVNDYKCVECEYKTNNKTNLEVHIKRKHLKVSDYKCVECEYKTSNKRNLEVHIKTKHLKVSDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-