Mmel064070.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000534.1:457351-459585[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.011 1.2 13.1 1.8 1 20 73 92 73 94 0.94 2 21 0.41 48 8.1 7.9 1 23 134 157 134 157 0.95 3 21 0.17 20 9.3 2.1 1 23 163 186 163 186 0.97 4 21 0.0002 0.024 18.5 1.9 1 23 192 215 192 215 0.98 5 21 0.00026 0.031 18.2 2.5 1 23 247 270 247 270 0.98 6 21 0.0013 0.15 16.0 0.5 1 23 276 299 276 299 0.98 7 21 0.0034 0.4 14.7 2.5 1 23 305 328 305 332 0.95 8 21 0.0011 0.13 16.2 1.1 1 23 334 357 334 357 0.97 9 21 0.00057 0.067 17.1 0.8 1 23 363 386 363 386 0.98 10 21 0.0013 0.15 16.0 0.1 1 23 392 415 392 415 0.93 11 21 0.00032 0.037 17.9 2.9 1 23 421 444 421 444 0.98 12 21 0.0013 0.15 16.0 3.5 1 23 450 473 450 473 0.97 13 21 0.00026 0.03 18.2 0.4 1 23 479 502 479 502 0.94 14 21 0.0051 0.59 14.1 2.2 1 23 508 531 508 531 0.98 15 21 5.1e-05 0.006 20.4 4.9 1 23 537 560 537 560 0.98 16 21 0.00049 0.057 17.3 1.5 1 23 566 589 566 589 0.96 17 21 0.3 35 8.6 0.5 1 23 595 618 595 618 0.95 18 21 0.022 2.6 12.1 0.4 1 23 624 647 624 647 0.98 19 21 0.0011 0.13 16.2 0.5 1 23 653 676 653 676 0.97 20 21 0.00013 0.015 19.1 3.5 1 23 682 705 682 705 0.98 21 21 0.00048 0.055 17.4 3.3 1 23 711 734 711 734 0.98
Sequence Information
- Coding Sequence
- ATGTTTTTTAAATTTTATTCGAATTCTTTGACTTTCAGAGACTACGAACTTTCATCAGCGGAGGTTCACGAGCTGCAAGTAGAACGGCGTTCATCTGAAAAACACAAGGCTAAAAGATGGAAGTGTGGAATATACAAATGTACACAATGCAAGTTCCGAACAAAATACCACGTCGAATTCAGGCACCACTCCAATAGGCATTACCAGGTGAAAATGTACAAATGTAGAATTTGCCGCAGAAGATACAATACGAAGAAATCTTTCAAGGCGCACGTGGAAAAAATTCGTGTGGACAATGCAGAAAGAGATGTCCAAAAATATCCTACATGTGACTATATCAAAGCTAATATTAAAAATGTAAAAGAGAGATCTACACATTCAGAAAGTAGTGCAAAACAATACCTATGTTCGAAATGCAAATTTCAAACAAAGAACAAATGTCACTTAAAATCACATATAAGAATAAAACATCTAACCAGAGGGAAATATAAGTGCACAAATTGCGCATTTAAGACATATTACAGGACGTATTTAGAAATGCACATGAAAATAGAACATCTCATAAAATGTAATTATGAATGCGCAGAGTGTGAATTTAAAACCAAGTATAAATCAAATTTACGAGTTCATATGAAAACTAAACATCTTAAAAAATACAATTATAAGTGTGAATATAAGACAAATGAGATGGCATGTTTAAAAGTACACGTGAAAACAAAACATGTTAAAGAACACGGTTATAAATGTGCAGAGTGTGAACACAAGACAAACAGCAAGTCAAATCTAGAAAAACACATAAAGAAAATACATCTTAAAGAATACGATTATAAATGCGCAGAGTGTGAATACAAGACAAACAGGAAACCAGATTTAGAAAGACACGTTAAAAGAATACATCTTAAAGTAAGAGACTATCAATGCGCAGACTGTGAATACAAGACAAGTGACAAGTCATGTTTGGAAAGACACATAACGGCAATACATCTCAGAAAACACGATTATAAATGCAAAGAGTGTGAATACAAGACAAACATCAAGTCAGATCTAGAAAAACATATGACGTCAATACATCTTAAAGAGTACGATTATAAATGCGCAGAGTGTGAATACAAGACAAGCAGGAAGCCAGACTTACAAAAACACGTGAAAAGAATACATCTTAAAGTAAGAGATTATATATGCGCAGACTGTGAATATAAGACAAGTGACAAGTCGACCTTAGAAAGACACATAACGGCAATACATCTTAAAGAACACAGTTATAAATGCACAGAGTGTGGACACAAGACAAACAGTAAATTAAATCTAGAAAAACACATAAAGAAAATTCATCTTAAAGAACGCGATCATAAATGCACAGAGTGTGAATACAAGTCGAACAGAATGTCAGATTTACAAAAACACATGAAGAGAATACATCTTAAAGTAAGAGATTATAAATGTGCAGACTGTGAATACAAGACAAGTGACAAGTCGAGTTTAGAACGACACATAACGGCAATGCATCTTAAAGAACACGGTTATAAATGCGCAGAGTGTGAACACAAGACAAACAGCAAGTTAAATCTAGAAAAACACATAAAGAAAATTCATCTTAAAGAATGCGATTATAAATGCACAGAGTGTGAATACAAGACAAACAACAAGTCACATTTACAAAAACACATGAAGAGAATACATCTTAAAGTAAGAGATTATAAATGCGCAGGCTGTAAATATAAGACATGTGATAAGTCAAGTTTAGAAAGACACATAATGGCAATACATCTTAAAGAACGCGATTATAAATGCGCCGAGTGTGAATACAACACAAATAATAAGTTACGTTTGCAAGCTCACGTGAAAGCGAAACATCTTAAAGAATACGATTATAAATGCGCAGAGTGTGAATACAAGACAAACATCAAACTAGATCTAGAAAAACACATAAAGACAATACATCTTAAAGAACATGATTATAAATGCGCAGAGTGTGAATACAAGACAAATAATAAATCAGGTTTACAGGCACACGTAAAGGTGAAACATCTGAAACAATACGATTATAAATGCGCAAAGTGTGAATACAAGACAAGCAACAAGTCGCATTTACAAAGCCACATAAAGACAATACATCTTAAAGAACACGATTATAAATGCGCAGAGTGTGAATACAAGACAAACAACAAGTCACATTTGCAAAAACACGTGAAGCGAATACATCTTAAAGTAAGAGATTATAAACATGCTCTGTGA
- Protein Sequence
- MFFKFYSNSLTFRDYELSSAEVHELQVERRSSEKHKAKRWKCGIYKCTQCKFRTKYHVEFRHHSNRHYQVKMYKCRICRRRYNTKKSFKAHVEKIRVDNAERDVQKYPTCDYIKANIKNVKERSTHSESSAKQYLCSKCKFQTKNKCHLKSHIRIKHLTRGKYKCTNCAFKTYYRTYLEMHMKIEHLIKCNYECAECEFKTKYKSNLRVHMKTKHLKKYNYKCEYKTNEMACLKVHVKTKHVKEHGYKCAECEHKTNSKSNLEKHIKKIHLKEYDYKCAECEYKTNRKPDLERHVKRIHLKVRDYQCADCEYKTSDKSCLERHITAIHLRKHDYKCKECEYKTNIKSDLEKHMTSIHLKEYDYKCAECEYKTSRKPDLQKHVKRIHLKVRDYICADCEYKTSDKSTLERHITAIHLKEHSYKCTECGHKTNSKLNLEKHIKKIHLKERDHKCTECEYKSNRMSDLQKHMKRIHLKVRDYKCADCEYKTSDKSSLERHITAMHLKEHGYKCAECEHKTNSKLNLEKHIKKIHLKECDYKCTECEYKTNNKSHLQKHMKRIHLKVRDYKCAGCKYKTCDKSSLERHIMAIHLKERDYKCAECEYNTNNKLRLQAHVKAKHLKEYDYKCAECEYKTNIKLDLEKHIKTIHLKEHDYKCAECEYKTNNKSGLQAHVKVKHLKQYDYKCAKCEYKTSNKSHLQSHIKTIHLKEHDYKCAECEYKTNNKSHLQKHVKRIHLKVRDYKHAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -