Mmel065459.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000542.1:1073928-1076267[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00065 0.075 16.9 0.3 1 23 19 42 19 42 0.96 2 24 0.29 34 8.6 6.2 1 23 109 132 109 132 0.97 3 24 0.0011 0.12 16.3 1.5 1 23 138 161 138 161 0.98 4 24 0.0047 0.55 14.2 0.6 1 23 167 190 167 190 0.98 5 24 0.012 1.4 12.9 1.7 1 23 196 219 196 219 0.96 6 24 0.0024 0.28 15.2 0.8 1 23 225 248 225 248 0.98 7 24 0.011 1.3 13.1 0.3 1 23 254 277 254 277 0.98 8 24 0.0012 0.14 16.1 0.5 1 23 283 306 283 306 0.98 9 24 0.0046 0.54 14.3 0.2 1 23 312 335 312 335 0.98 10 24 0.00083 0.097 16.6 1.4 1 23 341 364 341 364 0.98 11 24 0.0086 1 13.4 2.6 1 23 370 393 370 393 0.98 12 24 0.0027 0.31 15.0 1.3 1 23 399 422 399 422 0.96 13 24 0.0026 0.3 15.1 3.2 1 23 428 451 428 451 0.98 14 24 0.0043 0.51 14.3 0.7 1 23 457 480 457 480 0.96 15 24 0.016 1.9 12.5 2.8 1 23 486 509 486 509 0.98 16 24 0.029 3.4 11.7 1.2 1 23 515 538 515 538 0.98 17 24 0.00015 0.017 19.0 2.0 1 23 544 567 544 567 0.98 18 24 0.0093 1.1 13.3 2.5 1 23 573 596 573 596 0.98 19 24 0.005 0.58 14.2 3.0 1 23 602 625 602 625 0.98 20 24 0.0019 0.22 15.5 3.7 1 23 631 654 631 654 0.98 21 24 0.0012 0.14 16.1 2.2 1 23 660 683 660 683 0.98 22 24 0.0033 0.39 14.7 1.6 1 23 689 712 689 712 0.98 23 24 0.064 7.5 10.7 1.3 1 23 718 741 718 741 0.98 24 24 0.13 15 9.7 4.2 1 23 747 770 747 770 0.98
Sequence Information
- Coding Sequence
- ATGTACAACGCCGACTTCAGTAACCACATTAACCAGCATTGCGGGGCGAAAATGTACAAATGTGGAATTTGTGACAGAAGATACAAGGCGAAGGAATCTCTTAAGGTGCACGTCGAAAAAGTTCATATTAACCATGGAGGAAGAGATATCCAAAACTACTTTACGTGTGACTATTCCAAAGCCAATATTAAAAATATAAAATATAGATCTGCACAGTTACATGATGGTGGCAAACAGTGTGAATCCTCAAAATTCGAGTTTCACTCAAGGGGCAAATGCTCCTTAAAATCACTTATAAAAATAAAGCGTCTGAATAAAGGCAAATATAAGTGTACAAATTGCGAATTTAAAACATATTACAGGACCTGTTTAGAAAAGCACATGAAAATAAAACATCCCATGGAAAGTAATTATAAATGCACGGAGTGCGAATACGAGACAAATCGCAAGTTACTTTTAGAACGGCACATAAAAACAAAGCATATTAAAGAACACGATTATAAATGCGTAGAGTGTGAATTCAAGACGAACAACAAAGCATCTTTAAAAGGACACATAAAAACGGTACATCTTAAAGAAAGCGATTATAAATGCGCAGAATGTCAATACGAGACAAATACGAAGTATCGCTTGAAAGAACACATGAAGGCGAAACATCTTAAGGAACACGATTATGAATGCGCAGAGTGTGAATACAAGACAAACTTCAAGTCAAATTTGGAACTACACATCAAGTCAAAACATCTTAAAGAACACGATTATAAATGCGCAGAGTGTGACTACCAGACAAACTACAAAGCAGGTTTAAAAGGACACATAAAAAAGGTACATCTTAAAGAAAGTGATTATAAATGCATGGAGTGCGAATACCAGGTAAATAACAGTGGAGACTTAATAAAACACATAAAAACAAAGCATCTTAAAGAATACGATTATAAATGCGCAGAGTGTGAATACGAGACAAACTACAAAGCGGGTTTAAAAGATCACATAAAAACGGTACATCTTAAAGAAAGGCGTTATAGATGCGCAGACTGCGAATTCAAGACAAACCGCAAATCAAGCTTGGAATTACACATAAAGACAAAACATCTTAAGGTAACCGATTATAAATGCACAGAGTGTGAATTCAAGACAAACTACAAGTCAAAGTTGGAACTACACATAAAGTCAAAACACGTTAAAGAACATGATTATAAATGCGCAGAGTGTGAATACAAGACAAACACCAAGTTCAATTTAGAAAGACACGTAACGAAAATACATCTTAAAGAAAACGATTACGAATGCGCAGAGTGTGAATACAAGACAAGTCGCAAGTCATGCTTAGAAACACACATAAAAAGAAAACATCTGAAACAAAAGGATTATAAATGTACGGAGTGTGAATATAAGGCATATTACAAGGAAGCTTTAAAGAGACATATAAAAGAAGTACATCTGAATCAAAAGGATTACAAATGCATGGAGTGCGAATATGAGTCAAATCGTAAGTTACATTTAGAACAACACATAAAAACAAAACATCTTAAAGAACACGATTTCAAATGCGCAGAGTGTGAATTCAAAACAAACTACAAACAAAGTTTAAAAGGACATATTAAAACTATACATCTTAAAGAAAGGCGTTATAGATGTGCATACTGTGAATACAAGACCAACCGCAAATCGAACTTGGAATTACACATAAAGACAAAACATCTTAAAGTAACCGATTATAAATGCTCAGAGTGTGAATTCAAGACAAACTACAAGTCAAAGTTGGAACTACACATAAAGTCAAAACACGTTAAAGAACATGATTATAAATGCACGGAGTGCGAATTCAAGACAAACTACAAGTCAAAGTTGGAACAACACATAAAGTCAAAACATCTTAACGAACACGATTATAAATGCACAGAGTGTGAATACAAGACAAACAACAAGTCGCATTTGGAACTACACGTAAAGTCAAAACATCTTAAAGAACAGAATTATAAATGCACAGAGTGTGAATTCAAGACAAACTACAAGTCAAATTTAGAACTACACATAAAGTCAAAACATCTTAAAGAACACAATTATAAATGCGCAAAGTGTGAATTCAAGACAAACTACAAGTCAAATTTGGAATTACACATAAAGGTAAAACATCTTAAAATAAGTGATTATAAATGTGCAGAGTGCAAATACAAGACAAACTTGAAATTAAAATTAGAAGCGCACATAAAAACAAAACATCTGAAAGAAATGGATTATAAATGTACAGAGTGTGAATATCAGACGAACTACAAAGGATGTTTAAAAATTCACGTGAAAAGGAAACATCTGAACCAAAGCGATTTTAAATGCACATAG
- Protein Sequence
- MYNADFSNHINQHCGAKMYKCGICDRRYKAKESLKVHVEKVHINHGGRDIQNYFTCDYSKANIKNIKYRSAQLHDGGKQCESSKFEFHSRGKCSLKSLIKIKRLNKGKYKCTNCEFKTYYRTCLEKHMKIKHPMESNYKCTECEYETNRKLLLERHIKTKHIKEHDYKCVECEFKTNNKASLKGHIKTVHLKESDYKCAECQYETNTKYRLKEHMKAKHLKEHDYECAECEYKTNFKSNLELHIKSKHLKEHDYKCAECDYQTNYKAGLKGHIKKVHLKESDYKCMECEYQVNNSGDLIKHIKTKHLKEYDYKCAECEYETNYKAGLKDHIKTVHLKERRYRCADCEFKTNRKSSLELHIKTKHLKVTDYKCTECEFKTNYKSKLELHIKSKHVKEHDYKCAECEYKTNTKFNLERHVTKIHLKENDYECAECEYKTSRKSCLETHIKRKHLKQKDYKCTECEYKAYYKEALKRHIKEVHLNQKDYKCMECEYESNRKLHLEQHIKTKHLKEHDFKCAECEFKTNYKQSLKGHIKTIHLKERRYRCAYCEYKTNRKSNLELHIKTKHLKVTDYKCSECEFKTNYKSKLELHIKSKHVKEHDYKCTECEFKTNYKSKLEQHIKSKHLNEHDYKCTECEYKTNNKSHLELHVKSKHLKEQNYKCTECEFKTNYKSNLELHIKSKHLKEHNYKCAKCEFKTNYKSNLELHIKVKHLKISDYKCAECKYKTNLKLKLEAHIKTKHLKEMDYKCTECEYQTNYKGCLKIHVKRKHLNQSDFKCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -