Mmel144905.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001592.1:23497-26742[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 2.7 3.2e+02 5.5 4.8 1 23 69 92 69 93 0.95 2 31 6.6e-05 0.0076 20.1 3.5 1 23 98 121 98 121 0.98 3 31 0.053 6.2 10.9 0.2 1 23 127 150 127 150 0.98 4 31 0.00071 0.083 16.8 2.6 1 23 156 179 156 179 0.98 5 31 0.0024 0.28 15.1 0.8 1 23 185 208 185 208 0.98 6 31 0.35 40 8.4 0.2 1 23 214 237 214 237 0.98 7 31 8 9.4e+02 4.1 2.6 1 23 243 266 243 266 0.93 8 31 0.017 2 12.5 0.6 1 23 272 295 272 295 0.96 9 31 0.00021 0.024 18.5 0.8 2 23 303 325 302 325 0.97 10 31 0.0067 0.78 13.7 2.4 1 23 329 352 329 352 0.98 11 31 0.0085 0.99 13.4 1.0 1 23 358 381 358 381 0.97 12 31 0.00024 0.028 18.3 2.9 1 23 385 408 385 408 0.96 13 31 0.036 4.2 11.5 3.2 1 23 414 437 414 438 0.94 14 31 0.6 69 7.6 5.9 1 23 469 491 469 491 0.98 15 31 0.031 3.6 11.7 1.5 1 23 497 520 497 520 0.95 16 31 1.4 1.6e+02 6.5 5.0 1 23 576 599 576 600 0.96 17 31 5.3e-05 0.0062 20.4 2.6 1 23 605 628 605 628 0.98 18 31 0.0045 0.53 14.3 0.4 1 23 634 657 634 657 0.98 19 31 0.0018 0.21 15.6 1.9 1 23 663 686 663 686 0.98 20 31 0.0035 0.41 14.6 0.8 1 23 692 715 692 715 0.98 21 31 0.16 19 9.4 0.2 1 23 721 744 721 744 0.98 22 31 0.017 2 12.5 0.6 1 23 779 802 779 802 0.96 23 31 0.00025 0.029 18.3 1.1 2 23 810 832 809 832 0.97 24 31 0.0027 0.31 15.0 2.7 1 23 836 859 836 859 0.98 25 31 0.0085 0.99 13.4 1.0 1 23 865 888 865 888 0.97 26 31 0.039 4.5 11.4 2.4 1 23 892 915 892 915 0.93 27 31 0.01 1.2 13.2 3.3 1 23 921 944 921 945 0.95 28 31 0.051 5.9 11.0 5.4 1 23 950 973 950 973 0.98 29 31 6.3 7.3e+02 4.4 0.8 1 23 979 1002 979 1002 0.91 30 31 0.48 55 7.9 2.9 1 23 1008 1031 1008 1031 0.96 31 31 0.022 2.5 12.1 0.4 1 23 1042 1065 1042 1065 0.94
Sequence Information
- Coding Sequence
- ATGAAAGAATCTCTCAAGGCGCACGTTGAAAAAATTCATCTTGTCGATGAAAGAAATGTGCCAAACTGCTCCACGTATGACCATTTCTCTTCACATTCACATGAAGGTGAAAAACAATGTGAACGATCGAAAAGCAAATTTAAAATAAGGGACAAGTGTCGCTTAAAATCACGTATAAAAGTAAAACATAGAAACAGAGATAAATATAAATGCCTAAAATGTCAGTTTAAGACGTATTACAGTACTTATTTAGAAATACACATGACATTGAAACATCATATGGAAAGTGATTATAAATGTATGGAGTGTGGACACAGGACAAGTCGCAAAGCAGACTTAAAAAGGCACATAAGAAGAAAGCATTTAAAATTAAAAGATTATAAATGTGCAGAGTGTGAATATGAGGCAACTGGCAAGTCAGAGTTATATATTCACATAAAATCAAAACATCTTAAAGAATACGATTATGAATGCCCAGAGTGTAAATTCAAGACGAATTACAAGTCGCATTTGGACGCACACATAAGAACAAAACATCTCGACGTAAGCGATTATAAATGCGTGGAATGTGAATACGAGACAAACACGATGTCAAATTTAGGAACACACATGAGAACAAAACATCGTAAAGAAAATGGTTACAAATGCTCAGAGTGTGAATTCAAGACAAACTACATGCCAGATTTAGGGGCACACATAAAAATGGAACATTTTAAAGAAATCGATTATAAATGCACGGAGTGTGAATTCAAAACATTTTTCGAGGGACGTTTCAAAGCGCACATCACAAGAAAACATCCTAAAGTAAACGATTATAAATGCGAAGAGTGTGAATATAAGACAAATGACGAGTTACATTTACAAATACACATAAAAGCGGAACATCCTAAAGAACACCATTATAATAAATGCGTTGAGTGTGAATACAAGACAAAGGATAAGTCGGATTTAGTCAAACACATGAGGACAATACATGTAAAAAATTATAAATGCACAGAATGTGAATACAACACTAACAGGAAGTTACTTTTAAGTAAACATATAAAGACCAAGCATCTTAAGGAATACAATTATAAGTGCATGGAGTGTGAATTTATGACAAATTACAAGTCACAATTAAATGCCCATGTGAAAATAAAACATCGCGGAGAACATAAATGCACAGAGTGTAAATACACAACAAATAGGAAGTCGTCTTTAGAAAGACACATCAAGGCAATACATGCTAAAGAATACAATTATAAATGCATGGAATGTGAATACAAGACAAATTACAACTCAAATTTCAAAAGACACGTAGAAAATGCACATCATAAAGAGCACAGTTATAAATTCATGGAGTGTGAGTACGAGTCAAGCCGTTCGTCTCTTAGAAGCAAGGCCAAGAAATGGAAGCGCAGAATATACAAATGTACGCAGTGCAAGTTCAGGACAAGGTACAACGCCGACTTCAGGCACCACACTAACGAGCATTACGGGGTGAAAATGCACAGATGTGGAATTTGTTACCAAAGGTATAAGATGAAGGAATCTCTCAAGGCGCACGTGGAAAAAATTCATCTTGTCGATGAAAGAAATGTCCCAAACTGCTCCACGTATGACTATTTCTCTTCACATTCACATGAAGGTGAAAAACAATGTGAACGATCCAAAAGCAAATTTAAAATAAGGGACAAGTGTCGCTTAAAATCACGTATAAAAGTAAAACATAAGAACAGAGATAAATATAAATGCCTAAAATGTCAGTTTAAGACGTATTACAGTACTTATTTAGAAATACACATGACAATGAAACATCATATGGAAAGTGATTATAAATGTATGGAGTGTGGACATAAGACAAGTCGCAAAGCAGACTTAAAAAGGCACATAAGAATAAAGCATTTAAAATTAAAGGATTATAAATGTGCAGAGTGTGAATATGAGGCAAGTCGCAAGTCAGAGTTATATATTCACATAAAATCAAAACATCTTAAAGAATACGATTATGAATGTCCAGAGTGTAAATTCGAGACGAACTACAAGTCGCATTTGGACGCACACATAAAAACAAAACATCTCGACGTAAGCGATTATAAATGCGTGGAATGTGAATACGAGACAAACTCAATGACAAATTTAGTAACACACATGAGAACAAAACATCGTAAAGAAAATGGTTACAAATGCTCAGAGTGTGAATTCAAGACAAACGACATGCCAGATTTAGGGGCACACATAAAAAAGGAACATTTTAAAGAAATCGATTATAAATGTACGGAGTGTGAATTCAAAACATTTTTCGAGGCATGTTTCAAAGCGCACATCACAAGAAAACATCCTAAAGTAAACGATTATAAATGCGAAGAGTGTGAATATAAGACAAATGACGAGTTACATTTACAAATACACATAAAAGCGGAACATCCTAAAGAACACCATTATAATAAATGCGTTGAGTGTGAATACAAGACAAAGGATAAGTCGGATTTAGTCAAACACATGAGGACAATGCATGTAAAAAATTATAAATGCACAGAATGTGAATACAACACAAACAGGAAGTTACTTTTAAGAAAACATATAAAGACCAAGCATCTTAAGGAATACGATTATAAATGCATGGAGTGTGAATTTATGACAAATTACAAGTCACAATTAAATGCCCATGTGAAAATAAAACATCGCGGAGAACATAAATGCATAGAGTGTAAATACAAAACAAATAGGAAGTCGTCTTTAGAAAGACACATCAAGGCAATACATGCTAAAGAATACAATTATAAATGCATGGAATGTGAATACAAGACAAATTCCAATTCAAATTTCAAAAGACACTTAGAAAATGTACATCATAAAGAGCAAAGTTATAAATGCACAGAGTGTCAATACAAGACAAATAACAAATTACATTTAAAAACACACGAAAATACAAAACATCCTAAAGAAAGAGTTTATAAGTGCAAGAAATGTGAATACGTGGCACTTTACAGACCGGAATTGAAAAGTCACGAAAAAATAAAACATCGCAATGAAGGCACATATAAATGTACAGAATGTAAATACGTAACATTGCGCAAGTTTCTCTTAGAAAGACACAAAAAGGAAAAACACACAATAGTAAAACCTAGTAAGAAACGTGAATATAAATGCACAGAGTGTGAATACAAGCCAAATAACAAGTCGGATTTACAAAAACACTTGATAGCAGAACATCTTAAAGAAAGCTATTATAAATGCGTGGAGTATCAATTCAAGACAAAATGA
- Protein Sequence
- MKESLKAHVEKIHLVDERNVPNCSTYDHFSSHSHEGEKQCERSKSKFKIRDKCRLKSRIKVKHRNRDKYKCLKCQFKTYYSTYLEIHMTLKHHMESDYKCMECGHRTSRKADLKRHIRRKHLKLKDYKCAECEYEATGKSELYIHIKSKHLKEYDYECPECKFKTNYKSHLDAHIRTKHLDVSDYKCVECEYETNTMSNLGTHMRTKHRKENGYKCSECEFKTNYMPDLGAHIKMEHFKEIDYKCTECEFKTFFEGRFKAHITRKHPKVNDYKCEECEYKTNDELHLQIHIKAEHPKEHHYNKCVECEYKTKDKSDLVKHMRTIHVKNYKCTECEYNTNRKLLLSKHIKTKHLKEYNYKCMECEFMTNYKSQLNAHVKIKHRGEHKCTECKYTTNRKSSLERHIKAIHAKEYNYKCMECEYKTNYNSNFKRHVENAHHKEHSYKFMECEYESSRSSLRSKAKKWKRRIYKCTQCKFRTRYNADFRHHTNEHYGVKMHRCGICYQRYKMKESLKAHVEKIHLVDERNVPNCSTYDYFSSHSHEGEKQCERSKSKFKIRDKCRLKSRIKVKHKNRDKYKCLKCQFKTYYSTYLEIHMTMKHHMESDYKCMECGHKTSRKADLKRHIRIKHLKLKDYKCAECEYEASRKSELYIHIKSKHLKEYDYECPECKFETNYKSHLDAHIKTKHLDVSDYKCVECEYETNSMTNLVTHMRTKHRKENGYKCSECEFKTNDMPDLGAHIKKEHFKEIDYKCTECEFKTFFEACFKAHITRKHPKVNDYKCEECEYKTNDELHLQIHIKAEHPKEHHYNKCVECEYKTKDKSDLVKHMRTMHVKNYKCTECEYNTNRKLLLRKHIKTKHLKEYDYKCMECEFMTNYKSQLNAHVKIKHRGEHKCIECKYKTNRKSSLERHIKAIHAKEYNYKCMECEYKTNSNSNFKRHLENVHHKEQSYKCTECQYKTNNKLHLKTHENTKHPKERVYKCKKCEYVALYRPELKSHEKIKHRNEGTYKCTECKYVTLRKFLLERHKKEKHTIVKPSKKREYKCTECEYKPNNKSDLQKHLIAEHLKESYYKCVEYQFKTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -