Mmel064126.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melolontha melolontha
Gene Symbol
-
Assembly
GCA_935421255.1
Location
CAKXYX010000534.1:738731-740815[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0038 0.44 14.5 5.9 1 23 19 42 19 42 0.96
2 20 0.094 11 10.1 2.0 1 23 138 161 138 161 0.97
3 20 0.0075 0.87 13.6 1.3 2 23 168 190 167 190 0.97
4 20 0.00013 0.015 19.2 0.5 1 23 196 219 196 219 0.98
5 20 2.7e-05 0.0032 21.3 2.8 1 23 225 248 225 248 0.98
6 20 0.00045 0.053 17.4 0.4 1 23 254 277 254 277 0.98
7 20 0.00016 0.018 18.9 2.2 1 23 283 306 283 306 0.98
8 20 0.00011 0.013 19.4 1.7 1 23 312 335 312 335 0.98
9 20 0.0028 0.32 15.0 1.4 1 23 341 364 341 364 0.98
10 20 0.039 4.6 11.3 2.1 1 23 370 393 370 393 0.98
11 20 4.7e-05 0.0055 20.5 0.6 1 23 399 422 399 422 0.98
12 20 0.00027 0.031 18.2 2.4 1 23 428 451 428 451 0.98
13 20 0.0033 0.38 14.7 1.8 1 23 457 480 457 480 0.98
14 20 1.9e-05 0.0022 21.8 2.8 1 23 486 509 486 509 0.98
15 20 3.7e-05 0.0043 20.9 1.4 1 23 515 538 515 538 0.98
16 20 0.0039 0.45 14.5 1.5 1 23 544 567 544 567 0.98
17 20 0.0028 0.32 15.0 1.4 1 23 573 596 573 596 0.98
18 20 0.0094 1.1 13.3 1.8 1 23 602 625 602 625 0.98
19 20 1.5e-05 0.0018 22.1 1.8 1 23 631 654 631 654 0.98
20 20 0.00081 0.094 16.6 0.8 1 23 660 683 660 683 0.98

Sequence Information

Coding Sequence
ATGTACAACGCCGATTTCAGGCACCACATTAATGAGCATTACCAAGTGAAAATGCACAAATGTAGAATTTGTCACAGAAGATACAAGACGAAGGAATCTCTCAAGATGCACTTGGAAAAAATTCATGCTGACAATGAAGGAAGAAATGTCCAAAAATTATCTATGTCTGATTACTTTAAAGCCAGTATTAAAAATATAAAAAAGAGATCTTCACACTCTCGTGATAGCGAAAAACAACCCCAGTCCTCGATATCTAAGTTTCAAACGAGGGACAAATGTCATTTAAAATCATTTATAAAAATAAAACATCTGAGCAGAGGCAAATATAAGTGCGCAAGTTGCGAGTTTAAGACATATTACAGGTCTCGTTTAGAAATGAACACGAAAATGAAACATCTCGTGGAAAGTTATTATAAATGCATCGAGTGTCAATTCCAGACGAACTTCAAATCAAGTTTGGAAGTACACATGAAGACAAAACATCTGAAACAAAAGAATAATAAATGTCCAGTGTGTGAATACAAGACAAATAAGAAGTTAAATTTAGAAAAACACACAAAGACAATACATCTTAAAGACCACGTATATAAATGCCCAGAGTGTGAACTCAAGACAAATGAGAAGACAAATTTAGAAAAACACATAAAGACTATACATCTTAAAGAACACGATTATAAATGCACAGAGTGTGAATATAAAACAAATAACAAGTCACATTTACAAGCACACATAAAGACGATACATCTTAAAGAATACGATTATAAATGTACAGTGTGTGAACTCAAAACAAATGGGAAGGCAAATTTAGAAAAACACATAAAGACAATACATCTTAAAGAGCACGATTATAAATGCGACGGGTGTGAATTCAAGACAAATAGCAGGTCACATTTAAGAGCACACATAAAGACAATACATCTTAAAGAATACAATTATAAATGCACAGCATGTGAATACAAGACAAATAGAAAGTCAAATTTAGAAAAACACATAAAGACAATACATCTTAAAGTGCACGATTATAAATGCACAGCATGTGAATACAAGACAAATAATATGTCAAATTTAGAAAGGCACACCAAGACAATACATCTTAAGGAATACGATTATAAATGCACAGCGTGTGAATACAAGACAAATAAGAAGTTAAATTTAGAAAAACACACAAAGACAATACATCTTAAAGAACACGAATATAAATGCGCAGAGTGTGAATTCATGACAAATGACAAGTCAAATTTAGAAAAACACATAAAGACTATACATCTTAAAGAACACGATTATAAATGCGTAGAGTGTGAATACAAAACAAATAACAAGTCACATTTAAAAGCACACGTAAAGACAATACATCTTAAAGAATACGATTATAAATGTACAGCCTGTGAATACAAGACAAATAAGATGTCAAATTTAGAAAGACATATAAAGACGACACATCTTAAAGAACACGATTATAAATGCACAGACTGTGAATATAAAACAAATAACAAGTCACATTTACAAGCACACATAAAGACGATACATCTTAAAGAGCACGATTATAAATGCGACGAGTGTGAATTCAAGACAAATAGAAAGTCAAATTTAGAAACACATATCAAGACAATACATCTTAAAGTGCACGATTATAAATGCACAGCATGTGAATACAAGACAAATAATATGTCAAATTTAGAAAAGCACACAAAGACCATACATCTTAAAGTTCACGATTATAAATGCACAGCATGTGAATACAAGACAAATAATATGTCAAATTTAGAAAGGCACACCAAGACAATACATCTTAAGGAATACGATTATAAATGCACAGCGTGTGAATACAAGACAAATAAGATGTCAAATTTAGAAAGGCACACCAAGACAATACATCTTCAAGAACACGATTATAAATGCACAGAGTGTGAATACAAAACAAATAGGAAGTCGTCTTTAGAAAGACACATAAAGACAATACATCTTGAAGTTAGCGATTATAAATGCGCAGACTGTGAATATAAGACAAATGACAAGACATATTTAAAAGCACACGTAAAGACAATACATCTTAAAGAACAATATTATAAATGCGCAGAACTTTAA
Protein Sequence
MYNADFRHHINEHYQVKMHKCRICHRRYKTKESLKMHLEKIHADNEGRNVQKLSMSDYFKASIKNIKKRSSHSRDSEKQPQSSISKFQTRDKCHLKSFIKIKHLSRGKYKCASCEFKTYYRSRLEMNTKMKHLVESYYKCIECQFQTNFKSSLEVHMKTKHLKQKNNKCPVCEYKTNKKLNLEKHTKTIHLKDHVYKCPECELKTNEKTNLEKHIKTIHLKEHDYKCTECEYKTNNKSHLQAHIKTIHLKEYDYKCTVCELKTNGKANLEKHIKTIHLKEHDYKCDGCEFKTNSRSHLRAHIKTIHLKEYNYKCTACEYKTNRKSNLEKHIKTIHLKVHDYKCTACEYKTNNMSNLERHTKTIHLKEYDYKCTACEYKTNKKLNLEKHTKTIHLKEHEYKCAECEFMTNDKSNLEKHIKTIHLKEHDYKCVECEYKTNNKSHLKAHVKTIHLKEYDYKCTACEYKTNKMSNLERHIKTTHLKEHDYKCTDCEYKTNNKSHLQAHIKTIHLKEHDYKCDECEFKTNRKSNLETHIKTIHLKVHDYKCTACEYKTNNMSNLEKHTKTIHLKVHDYKCTACEYKTNNMSNLERHTKTIHLKEYDYKCTACEYKTNKMSNLERHTKTIHLQEHDYKCTECEYKTNRKSSLERHIKTIHLEVSDYKCADCEYKTNDKTYLKAHVKTIHLKEQYYKCAEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-