Mmel077705.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000652.1:592232-596236[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.00018 0.021 18.7 0.9 1 23 2 25 2 25 0.97 2 31 0.0025 0.3 15.1 1.0 1 23 116 139 116 139 0.98 3 31 0.048 5.6 11.1 2.0 1 23 145 167 145 167 0.98 4 31 0.0018 0.21 15.5 0.4 1 22 173 194 173 194 0.96 5 31 0.014 1.7 12.7 0.5 2 23 203 225 202 225 0.96 6 31 0.044 5.1 11.2 0.6 1 23 231 254 231 254 0.98 7 31 0.0016 0.19 15.7 1.2 2 23 261 283 260 283 0.97 8 31 0.0057 0.66 14.0 0.9 1 23 289 312 289 312 0.98 9 31 0.00018 0.021 18.7 0.7 1 23 318 341 318 341 0.98 10 31 0.09 10 10.2 0.4 1 23 347 370 347 370 0.98 11 31 0.0072 0.84 13.6 0.7 2 23 377 399 376 399 0.94 12 31 0.0057 0.66 14.0 0.9 1 23 405 428 405 428 0.98 13 31 0.0038 0.45 14.5 2.8 1 23 434 457 434 457 0.98 14 31 0.022 2.6 12.1 1.0 2 23 464 486 463 486 0.96 15 31 0.0038 0.45 14.5 2.8 1 23 492 515 492 515 0.98 16 31 0.0046 0.53 14.3 2.0 2 23 522 544 521 544 0.96 17 31 0.017 2 12.5 0.5 2 23 551 573 550 573 0.96 18 31 0.002 0.24 15.4 2.0 2 23 580 602 579 602 0.96 19 31 0.0046 0.53 14.3 2.0 2 23 609 631 608 631 0.96 20 31 0.017 2 12.5 0.5 2 23 638 660 637 660 0.96 21 31 0.0046 0.53 14.3 2.0 2 23 667 689 666 689 0.96 22 31 0.15 17 9.5 0.3 2 23 696 718 695 718 0.96 23 31 0.0014 0.16 15.9 1.3 2 23 725 747 724 747 0.96 24 31 0.00068 0.079 16.9 1.4 2 23 760 782 759 782 0.97 25 31 6.4 7.4e+02 4.4 2.1 2 23 789 811 788 811 0.96 26 31 0.37 43 8.3 2.5 1 23 817 840 817 840 0.98 27 31 0.32 37 8.5 1.6 2 23 847 868 846 868 0.96 28 31 0.37 43 8.3 2.5 1 23 874 897 874 897 0.98 29 31 0.37 43 8.3 2.5 1 23 903 926 903 926 0.98 30 31 0.0019 0.22 15.5 1.6 1 23 932 955 932 955 0.98 31 31 0.23 26 8.9 0.4 2 23 962 983 961 983 0.96
Sequence Information
- Coding Sequence
- ATGTACAAATGTGGAATTTGTCGGCGAGGGTACAAAACGAGAGACTCTCTGAAGATGCACATGGAAAAAATTCATCCCGGCAATGAAAGTAGAGATGTCGGGAAGCACTATATCAAAGCTAATGTTAAAAATGTAAAAGGAAGATCTCCACATTTACACGATGGTAAAGAACAATGTAAATGCTCGAAATGCAAATTTCGAACAAGGGACAAATGTCACTTAAAATCACTAAAAATAAAACATCTGAATCGAGGCAAATATAAATGCGCAAATTGGGAGTTTAAGACACATTACGGGACTTATTTAGGAAAGCACATTAAAATGAAACATCTGAAACAAAAGAATTATAAATGCGCAAACTGTGAATATAAGGCAAATAACAAGTCAGCCTTAGAGAAACATTTAAAAACGAAACATCTGAAACAAAAGAATTTTAAATGTGCAGAGTGTGAATACCAGACAAACAAGTATAACTTAAAACTGCACATAAAAACAAAACATCTGAAACAAAGGGATTTTAAATGTGCAGAGTGTGAATACCAGACAAGCAACAAGTCAAACTTAGAAGCGCACACAAAAACAATACTTCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTGAATTTAAGACAAACTACAAGTCAAGCTTAGAAGCGCACATAAAAGTAAAACATTTAAAACAAGAGAACTTTAAATGCACAGAATGTGAATACAAGACAGCCTGGAAGGCAAACTTAGAAATGCACATAAAAACAAGACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTAAATACCAGACAAACAACAAGTCAAACTTAGAATTGCACATAAAAACAAAACATCTCAATGAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACTACAAGTCAAGCTTAGAAGTGCACGTAAAAACAAAACATCTCAAAGAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACAACAAATCAAACTTAGAAGTACACATAAAAACAAGACATCTCAAAGAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACATAAAGTTAAACTTAGAAGTGCACATAAAAACAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTAAATACCAGACAAACAACAAGTCAAACTTAGAATTGCACATAAAAGCAAAACATCTCAATGAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACTACAAGTCAAGCTTAGAAGTGCACGTAAAAACAAAACATCTCAAAGAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACTACAAGTCACATTTACAAGTACACATAAAATCAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTAAATACCAGACAAACTACAAGTCAAGCTTAGAAGTGCACGTAAAAACAAAACATCTCAAAGAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACTACAAGTCACATTTACAAGTACACATAAAATCAAAACATCTGAAACAAAGGGATTTAAAATGCGCAGAGTGTGAATACCAGACAAACAACAAGTCACATTTACAAGTACACATAAAATCAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTGAATACCAGACGAACTACAAGTCAAGCTTAGAAGCGCACGTAAAAACAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTGAATACCAGACAAGCAACAAGTCACATTTACAAGTACACATAAAATCAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTGAATACCAGACAAACAACAAGTCACATTTACAAGTACACATAAAATCAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTGAATACCAGACGAACTACAAGTCAAGCTTAGAAGCGCACGTAAAAACAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTGAATACCAGACAAACAACAAGTCACATTTACAAGTACACATAAAATCAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTGAATACCAGACGAACTACATGTCAAGCTTAGAAGCGCACGTAAAAACAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTGAATACCAGACAAGCAACAAGTCTAACTTAAAACTGCACATAAAAAGAAAACATCTGAAACAAAAAGATTTTAAATGCGCAGAGTATTTGAAATGCGCAGAGTGTGAATACCGGACAAACAACAAGTCTAACTTAAAACTGCACATAAAAACAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTGAATACCAGACAAACTGCAAGACAAACTTAGAAGTGCACGTAAAAACAAAACATCTCAAAGAAAATTATTATAAATGTGCAGAGTGTGAATACCAGACAAACTGCAAGTCAAACTTAGAAGTGCACGTAAAAACAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTGAATACCAGACAAACAAGTCACACTTAGAAGTGCACGTAAAAACAAAACATCTCGAAGAAAATGATTATAAATGTGCAGAGTGTGAATACCAGACAAACTGCAAGTCAAACTTAGAAGTGCACGTAAAAACAAAACATCTCGAAGAAAATGATTATAAATGTGCAGAGTGTGAATACCAGACAAACTGCAAGTCAAACTTAGAAGTGCACGTAAAAACAAAACATCTGAAACAAAATGATTATAAATGCGCAGAGTGTAAATACCAGACAAACTACAAGTCAAACTTAGAAGTGCACGTAAAAACAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTGAATACCAGACAAACAAGTCAAGCTTAGAAGCGCACGTAAAAACAAAACATCTCGAAGAAAATGATTATAAATTTGTAGATCCATTGGGAAGTTTTACTTGGACGAAAGAAAATATAAAATTGCTAACAACTGCGTATTTGAAAAGGAAAAAAGAATTTAGGGATCCACGTCGAAAAAAGGTGAATCTGTGGAGAGATATCCAGAAGGAGTTCCAACAGCATGGATATGATATAAGTGAGACCACAGATTCTACAAGCGAAAACTCTAGTATACCAGACAGCTTCTTAAACACAACAATAACTTCTGGTATCTGTCATGAAACTATACAGTCACAGCGACAAAAACGAAAATGTAACAATATGAGGGCATTAAAAAATCCGAGACAGCAAGTTGCTGATATTGGAGAAAGAAGGGTGGCTGCTATTGAAAAGCTGTCTGGAGAACTCGCAGAACATAATAGGATTCAGCGGGAAAGGAAGGAGCTAATTAAACAAATTTATGAAATAGATTGA
- Protein Sequence
- MYKCGICRRGYKTRDSLKMHMEKIHPGNESRDVGKHYIKANVKNVKGRSPHLHDGKEQCKCSKCKFRTRDKCHLKSLKIKHLNRGKYKCANWEFKTHYGTYLGKHIKMKHLKQKNYKCANCEYKANNKSALEKHLKTKHLKQKNFKCAECEYQTNKYNLKLHIKTKHLKQRDFKCAECEYQTSNKSNLEAHTKTILLKQKDLKCAECEFKTNYKSSLEAHIKVKHLKQENFKCTECEYKTAWKANLEMHIKTRHLKQKDLKCAECKYQTNNKSNLELHIKTKHLNENDYKCAECEYQTNYKSSLEVHVKTKHLKENDYKCAECEYQTNNKSNLEVHIKTRHLKENDYKCAECEYQTNIKLNLEVHIKTKHLKQKDLKCAECKYQTNNKSNLELHIKAKHLNENDYKCAECEYQTNYKSSLEVHVKTKHLKENDYKCAECEYQTNYKSHLQVHIKSKHLKQKDLKCAECKYQTNYKSSLEVHVKTKHLKENDYKCAECEYQTNYKSHLQVHIKSKHLKQRDLKCAECEYQTNNKSHLQVHIKSKHLKQKDLKCAECEYQTNYKSSLEAHVKTKHLKQKDLKCAECEYQTSNKSHLQVHIKSKHLKQKDLKCAECEYQTNNKSHLQVHIKSKHLKQKDLKCAECEYQTNYKSSLEAHVKTKHLKQKDLKCAECEYQTNNKSHLQVHIKSKHLKQKDLKCAECEYQTNYMSSLEAHVKTKHLKQKDLKCAECEYQTSNKSNLKLHIKRKHLKQKDFKCAEYLKCAECEYRTNNKSNLKLHIKTKHLKQKDLKCAECEYQTNCKTNLEVHVKTKHLKENYYKCAECEYQTNCKSNLEVHVKTKHLKQKDLKCAECEYQTNKSHLEVHVKTKHLEENDYKCAECEYQTNCKSNLEVHVKTKHLEENDYKCAECEYQTNCKSNLEVHVKTKHLKQNDYKCAECKYQTNYKSNLEVHVKTKHLKQKDLKCAECEYQTNKSSLEAHVKTKHLEENDYKFVDPLGSFTWTKENIKLLTTAYLKRKKEFRDPRRKKVNLWRDIQKEFQQHGYDISETTDSTSENSSIPDSFLNTTITSGICHETIQSQRQKRKCNNMRALKNPRQQVADIGERRVAAIEKLSGELAEHNRIQRERKELIKQIYEID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -