Mmel064066.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melolontha melolontha
Gene Symbol
-
Assembly
GCA_935421255.1
Location
CAKXYX010000534.1:440670-442592[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.34 40 8.4 5.7 1 20 2 21 2 23 0.94
2 20 0.21 25 9.0 8.3 1 23 63 86 63 86 0.95
3 20 0.071 8.2 10.5 3.4 1 23 92 115 92 115 0.97
4 20 0.00044 0.052 17.5 1.3 1 23 121 144 121 144 0.98
5 20 0.00022 0.026 18.4 2.5 1 23 150 173 150 173 0.98
6 20 0.0019 0.22 15.5 0.5 1 23 179 202 179 202 0.98
7 20 0.00053 0.061 17.2 1.1 1 23 237 260 237 260 0.96
8 20 0.0018 0.21 15.5 0.6 1 23 266 289 266 289 0.98
9 20 0.0014 0.16 15.9 0.1 3 23 297 318 296 318 0.92
10 20 0.00069 0.08 16.9 2.4 1 23 324 347 324 347 0.98
11 20 0.00029 0.034 18.0 1.4 1 23 353 376 353 376 0.98
12 20 5e-05 0.0058 20.4 3.6 1 23 382 405 382 405 0.98
13 20 0.00042 0.049 17.5 0.7 1 23 411 434 411 434 0.98
14 20 2.4e-05 0.0028 21.5 1.2 1 23 440 463 440 463 0.98
15 20 8.3e-05 0.0096 19.8 1.2 1 23 469 492 469 492 0.98
16 20 0.00015 0.018 18.9 0.9 1 23 498 521 498 521 0.98
17 20 0.012 1.4 12.9 0.5 1 23 527 550 527 550 0.98
18 20 0.0014 0.16 15.9 1.4 1 23 556 579 556 579 0.98
19 20 7.2e-05 0.0084 19.9 3.8 1 23 585 608 585 608 0.98
20 20 0.0031 0.37 14.8 0.6 1 20 614 633 614 633 0.98

Sequence Information

Coding Sequence
ATGTACAAATGTAGAATTTGTCACAGAAGATGCAATACGAAAAAATTTTTCAAGGCGCACGTGGAAAAAATTCGTGTTGACAATGCAGGAAGAGATGTCCAAAAATACCCTACGTGTGATAATATCAAAGCTAATATTAAAAATGTAAAAGAGAAATCTATACATTCAAAAAATGGTGAAAAACAATACCTATGCTCGAAATGCAAATTTAAAACAAGGAACAAATGTCACTTAAAATCACATATAAGAATAAAACATCTGAACAGAGGCAAATATAAGTGCACAAATTGCGAGTTTAAGACATATTACAGGACTTATTTAGAAATGCACATGAAAATAAAACATCTCATGAAATGTAATTATGAATGCGCAGAGTGTGAATTTAAAACCAACTATAAATCAAATTTACGAGTTCACATGAAAATGAAACATCTTAAAGAACACGGTTATAAATGCGCAGAGTGTGAACACAAGACAAACAGCAAGTCAAATTTAGAAAAACACATAAAGAAAATACATCTTAAAGAATACGATTATAAATGCGCAGAGTGTCAATACGAGACAAACAGGAAACCAGATTTAGAAAAACACGTTAAAAGAATACATCTTAAAATAAGAGACTATAAATGCGAAGACGGTGAATACAAGCCAAGTGACAAGTCATGTTTAGAAAGACACATAACGGCAATACATCTCAGAAAACAAAATTATAAATGCAAAGAGTGTCAATACAAGACAAACATCAAGTCAGATCTAGAAAAACATATGAAGGCAATACACCTTAAAGAGTACTATTATAAATGCGCAGAGTGTGAATACAAGACAAACAGGAAGCCAGATTTACAAAACCACGTGAAAAGAATACATCTTAAAGTAAGAGATAATATATGCGCAGACTGTGAATACAAGACAAGTGACAAGTCGAATTTAGAAAGACACATAACGGCAATACATCTTAAAGAACACGGTTATAAATGCGCAGAGTGTGGACACAAGACAAACAGCAAGTTAAATCTAGAAAAACACATAAAGAAAATGCATATTAAAGAACACGATTATAAATGCGCAGAGTGTGAATACAATACAAACAACAAGTCATATTTACAAGCACATTTGAAAACGAAACATCTGAAAGAATACGATTATAAATGCGCAGAATGTGAATACAAGACCAACAACAAGTCACATTTACAAAGGCACATGAAGAGAATACATCTTAAAGTAAGAGATTATAAATGCGCAAACTGTAAATACAAGGCAAGTGATAAGTCAAGTTTAGAAAGACATATAACGACAATACATCTTAAAGAACACGATTATAAATGCGCAGAGTGTGACTACAAGACAAATAATAAGTCAAATTTACAAGCACACGTGAAAACGAAACATCTGAAAGAACATGATTATAAATGCGCAGAGTGTGAATACAAGACAAATAATAAGTCAAATTTACAAGCACACGTGAAAACGAAACATCTGAAAGAACATGATTATAAATGCGCCGAGTGTGAATACAACACAAATAGTAAGTCAAATTTGCAAGCACACGTGAAAACGAAACATCTGAAAGAATACGATTATAGATGCGCAGAGTGTGGATACAAGACAAACATCAAGCTAGATCTAGAAAAACACACAAAGACAATACATCTTAAAGAACACGATTATAGATGCGCAGAGTGTGAATACAAGACAAATAATAAATCAGGTTTACGGACACACGTAAAAACGAAACATCTGAAAGAATTCGATTATAAATGCGCAGAGTGTGAATACAAGACAAACAACAAGTCACATTTGCAAAAACACATGAAGAGAATACATCTTAAAGTAAGCGATTATAAGTGCGTAGACTGCGAGTACAAGACAAGTTACAAGTCAAGTTTAGAAAGACACATACCGTGCCGTCATAATAGGTTGTAA
Protein Sequence
MYKCRICHRRCNTKKFFKAHVEKIRVDNAGRDVQKYPTCDNIKANIKNVKEKSIHSKNGEKQYLCSKCKFKTRNKCHLKSHIRIKHLNRGKYKCTNCEFKTYYRTYLEMHMKIKHLMKCNYECAECEFKTNYKSNLRVHMKMKHLKEHGYKCAECEHKTNSKSNLEKHIKKIHLKEYDYKCAECQYETNRKPDLEKHVKRIHLKIRDYKCEDGEYKPSDKSCLERHITAIHLRKQNYKCKECQYKTNIKSDLEKHMKAIHLKEYYYKCAECEYKTNRKPDLQNHVKRIHLKVRDNICADCEYKTSDKSNLERHITAIHLKEHGYKCAECGHKTNSKLNLEKHIKKMHIKEHDYKCAECEYNTNNKSYLQAHLKTKHLKEYDYKCAECEYKTNNKSHLQRHMKRIHLKVRDYKCANCKYKASDKSSLERHITTIHLKEHDYKCAECDYKTNNKSNLQAHVKTKHLKEHDYKCAECEYKTNNKSNLQAHVKTKHLKEHDYKCAECEYNTNSKSNLQAHVKTKHLKEYDYRCAECGYKTNIKLDLEKHTKTIHLKEHDYRCAECEYKTNNKSGLRTHVKTKHLKEFDYKCAECEYKTNNKSHLQKHMKRIHLKVSDYKCVDCEYKTSYKSSLERHIPCRHNRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-