Mmel196873.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010005974.1:1340010-1343317[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 1.8 2.1e+02 6.1 0.4 5 23 2 21 1 21 0.94 2 32 0.065 7.6 10.6 0.8 1 22 27 48 27 48 0.97 3 32 0.13 15 9.7 1.4 1 21 56 76 56 77 0.95 4 32 0.0097 1.1 13.2 1.1 1 23 88 111 88 111 0.98 5 32 0.042 4.8 11.3 2.1 1 23 117 140 117 140 0.98 6 32 0.0097 1.1 13.2 1.1 1 23 146 169 146 169 0.98 7 32 0.0048 0.56 14.2 1.8 1 23 175 198 175 198 0.98 8 32 0.0097 1.1 13.2 1.1 1 23 215 238 215 238 0.98 9 32 0.0097 1.1 13.2 1.1 1 23 244 267 244 267 0.98 10 32 0.042 4.8 11.3 2.1 1 23 273 296 273 296 0.98 11 32 0.0097 1.1 13.2 1.1 1 23 302 325 302 325 0.98 12 32 0.0048 0.56 14.2 1.8 1 23 331 354 331 354 0.98 13 32 0.0097 1.1 13.2 1.1 1 23 371 394 371 394 0.98 14 32 0.042 4.8 11.3 2.1 1 23 400 423 400 423 0.98 15 32 0.0097 1.1 13.2 1.1 1 23 429 452 429 452 0.98 16 32 0.0048 0.56 14.2 1.8 1 23 458 481 458 481 0.98 17 32 0.0097 1.1 13.2 1.1 1 23 498 521 498 521 0.98 18 32 0.042 4.8 11.3 2.1 1 23 527 550 527 550 0.98 19 32 0.0097 1.1 13.2 1.1 1 23 556 579 556 579 0.98 20 32 0.0048 0.56 14.2 1.8 1 23 585 608 585 608 0.98 21 32 0.0097 1.1 13.2 1.1 1 23 614 637 614 637 0.98 22 32 0.097 11 10.1 1.7 1 23 643 666 643 666 0.98 23 32 0.015 1.7 12.7 0.7 1 23 672 695 672 695 0.98 24 32 0.0079 0.92 13.5 1.2 1 23 701 724 701 724 0.98 25 32 0.0037 0.43 14.6 4.3 1 23 730 753 730 754 0.97 26 32 0.065 7.6 10.6 0.8 1 22 769 790 769 790 0.97 27 32 0.0048 0.56 14.2 1.8 1 23 798 821 798 821 0.98 28 32 0.0097 1.1 13.2 1.1 1 23 827 850 827 850 0.98 29 32 0.097 11 10.1 1.7 1 23 856 879 856 879 0.98 30 32 0.015 1.7 12.7 0.7 1 23 885 908 885 908 0.98 31 32 0.0079 0.92 13.5 1.2 1 23 914 937 914 937 0.98 32 32 0.0037 0.43 14.6 4.3 1 23 943 966 943 967 0.97
Sequence Information
- Coding Sequence
- ATGGAGTGTGAATACCAGACGAACTTTAAGTCAAATTTGAAAGGACACATAAAGTCAAAACATCTTAAATTACACGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGATAAACACATAAAGACAAAATATCTTAAATCAAACGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAAAACATAAAAAAAACACAAAGTCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCCAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGGTTAGAAAAACACATAAAGTCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCCAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAAAACACATAAAGTCAAAACATCTTAAATCAAGCGATTATAAATGCTCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCCAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGGTTAGAAAAACACATAAAGTCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCCAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAAAACACATAAAGTCAAAACATCTTAAATCAAGCGATTATAAATGCTCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCCAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGGTTAGAAAAACACATAAAGTCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCCAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAAAACACATAAAGTCAAAACATCTTAAATCAAGCGATTATAAATGCTCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCCAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGGTTAGAAAAACACATAAAGTCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCCAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAAAACACATAAAGTCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCAAGCTATTATAAGTGCATGGAATGTGAATACCAGACGAACTTCAAGGCACGATTAGAAAGACACATAAAGTCAAAACATCTTAAATTATGTGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTGGAGTCAAATTTGAAAGTACACATAAAGTCAAAACATCTTAAATCATGGGATTATAAATGCATGGACTGTGAATATCAGACCAACATGAAGTATAATTTGGAAGTACACATAAAGTCAAAACATCTTAAATCATGGGATTATAAATGCATGGAGTGTGAATATCAGACGAACTTTAAGTCAAATTTAGAAAAACACATAAAGACAAAACATCATAAATCAAGTGCATGGAGTTCAAAACATCTTAAATTACACGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGATAAACACATAAAGACAAAATATCTTAAATCAAACGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAAAACACATAAAGTCAAAACATCTTAAATCAAGCGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTTAAGTCAAGTTTAGAAATACACATAAAGTCAAAACATCTTAAATCAAGCTATTATAAGTGCATGGAATGTGAATACCAGACGAACTTCAAGGCACGATTAGAAAGACACATAAAGTCAAAACATCTTAAATTATGTGATTATAAATGCGTGGAGTGTGAATACCAGACGAACTTGGAGTCAAATTTGAAAGTACACATAAAGTCAAAACATCTTAAATCATGGGATTATAAATGCATGGACTGTGAATATCAGACCAACATGAAGTATAATTTGGAAGTACACATAAAGTCAAAACATCTTAAATCATGGGATTATAAATGCATGGAGTGTGAATATCAGACGAACTTTAAGTCAAATTTAGAAAAACACATAAAGACAAAACATCATAAATCAAGTGCATGGAGTGTGAATACCAAACAAACTTCAAGATAG
- Protein Sequence
- MECEYQTNFKSNLKGHIKSKHLKLHDYKCVECEYQTNFKSSLDKHIKTKYLKSNDYKCVECEYQTNFKSSLEKHKKNTKSKHLKSSDYKCVECEYQTNFKSSLEIHIKSKHLKSSDYKCVECEYQTNFKSRLEKHIKSKHLKSSDYKCVECEYQTNFKSSLEIHIKSKHLKSSDYKCVECEYQTNFKSSLEKHIKSKHLKSSDYKCSKHLKSSDYKCVECEYQTNFKSSLEIHIKSKHLKSSDYKCVECEYQTNFKSSLEIHIKSKHLKSSDYKCVECEYQTNFKSRLEKHIKSKHLKSSDYKCVECEYQTNFKSSLEIHIKSKHLKSSDYKCVECEYQTNFKSSLEKHIKSKHLKSSDYKCSKHLKSSDYKCVECEYQTNFKSSLEIHIKSKHLKSSDYKCVECEYQTNFKSRLEKHIKSKHLKSSDYKCVECEYQTNFKSSLEIHIKSKHLKSSDYKCVECEYQTNFKSSLEKHIKSKHLKSSDYKCSKHLKSSDYKCVECEYQTNFKSSLEIHIKSKHLKSSDYKCVECEYQTNFKSRLEKHIKSKHLKSSDYKCVECEYQTNFKSSLEIHIKSKHLKSSDYKCVECEYQTNFKSSLEKHIKSKHLKSSDYKCVECEYQTNFKSSLEIHIKSKHLKSSYYKCMECEYQTNFKARLERHIKSKHLKLCDYKCVECEYQTNLESNLKVHIKSKHLKSWDYKCMDCEYQTNMKYNLEVHIKSKHLKSWDYKCMECEYQTNFKSNLEKHIKTKHHKSSAWSSKHLKLHDYKCVECEYQTNFKSSLDKHIKTKYLKSNDYKCVECEYQTNFKSSLEKHIKSKHLKSSDYKCVECEYQTNFKSSLEIHIKSKHLKSSYYKCMECEYQTNFKARLERHIKSKHLKLCDYKCVECEYQTNLESNLKVHIKSKHLKSWDYKCMDCEYQTNMKYNLEVHIKSKHLKSWDYKCMECEYQTNFKSNLEKHIKTKHHKSSAWSVNTKQTSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -