Mmel077744.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000652.1:740853-743906[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.47 55 7.9 5.9 1 23 2 24 2 24 0.99 2 33 0.0011 0.13 16.2 1.3 1 23 30 53 30 53 0.96 3 33 0.11 13 9.9 1.9 1 23 120 143 120 143 0.98 4 33 0.013 1.5 12.9 2.7 1 23 150 173 150 173 0.98 5 33 3.7 4.4e+02 5.1 3.3 1 23 179 202 179 202 0.90 6 33 0.0025 0.3 15.1 0.7 1 23 208 231 208 231 0.98 7 33 0.0048 0.55 14.2 0.7 1 23 237 260 237 260 0.97 8 33 0.023 2.7 12.1 2.7 1 23 266 289 266 289 0.98 9 33 0.0026 0.3 15.1 0.6 2 23 296 318 295 318 0.97 10 33 0.0015 0.18 15.8 0.9 1 23 324 347 324 347 0.98 11 33 0.055 6.5 10.9 1.5 1 23 353 376 353 376 0.97 12 33 0.088 10 10.2 2.4 1 23 382 405 382 405 0.97 13 33 0.023 2.7 12.1 2.7 1 23 411 434 411 434 0.98 14 33 0.0026 0.3 15.1 0.6 2 23 441 463 440 463 0.97 15 33 0.00067 0.078 16.9 1.6 1 23 469 492 469 492 0.98 16 33 0.076 8.8 10.4 1.6 1 23 498 521 498 521 0.97 17 33 0.088 10 10.2 2.4 1 23 527 550 527 550 0.97 18 33 0.023 2.7 12.1 2.7 1 23 556 579 556 579 0.98 19 33 0.0029 0.33 14.9 0.6 2 23 586 608 585 608 0.96 20 33 0.00047 0.055 17.4 1.9 1 23 614 637 614 637 0.98 21 33 0.055 6.5 10.9 1.5 1 23 643 666 643 666 0.97 22 33 0.042 4.8 11.3 1.9 1 23 672 695 672 695 0.97 23 33 0.00047 0.055 17.4 1.9 1 23 701 724 701 724 0.98 24 33 0.00033 0.038 17.9 2.1 1 23 730 753 730 753 0.98 25 33 0.02 2.3 12.3 0.8 1 23 759 782 759 782 0.97 26 33 0.045 5.3 11.1 0.2 1 21 788 808 788 809 0.95 27 33 0.0062 0.72 13.9 1.6 1 23 817 840 817 840 0.97 28 33 0.0069 0.81 13.7 2.3 1 23 846 869 846 869 0.97 29 33 0.0073 0.85 13.6 1.1 1 23 875 898 875 898 0.97 30 33 0.021 2.4 12.2 1.0 1 23 904 927 904 927 0.97 31 33 0.46 53 8.0 1.2 1 23 933 956 933 956 0.98 32 33 0.055 6.4 10.9 2.5 1 23 962 985 962 985 0.98 33 33 0.35 41 8.3 1.8 1 23 991 1014 991 1014 0.98
Sequence Information
- Coding Sequence
- ATGTACAAATGCACGCAATGCAAGTTCAGAACAGTGTACAGCGCCGACTTCAGACACCACACTAACAAGCATTACGAGATGAAAATGTACAAATGTGGAATTTGTGACAGAAGATACAAGACGAGGGGATTTCTGAAGATGCACGTAGAAAAAAATCATGCCGAGAATGAAGGCAGAGAGTTCGAAAAATACTCTAAATGTGACTATTTCAAAGCTAATATTAAAAATATAAAAGGAAAATCTCTACATTCACATGATGGTAAAAAACATTGTCAATCCTCGAAATACAAATTTCAAAATAGAGACAAATGTCACTTAAAGTCACTTATAAAAATAAAACATCTGAACAGAGGCAAATATAAATGCGCAAATTGCGAGTTTAAGACATATTACAGAGCATATTTAGAAATGCATATGAAAATGAAACATCTCACGATTGAAGCTGATTATAAATGCATGAAGTGCGAATTCAAGACAAACTACAAGTCAGCCTTGGAAAGACACGTAAAAACAAAACATCTTAAACAAAAATATTATAAATGTGTAGAGTGTGAACACCAGACAAACTACAAGCCGCATTTACAAGCCCACCCAAAAACAAAACATCTGAAACAAAATGTATATAAATGTGCAGAGTGTGAATACCAGACAAACAACAAGTCAAACTTAGAAGGGCACGTAAAAACAAAACATCTGAAACAAAATGATTATAAATGCGCAGAATGTGAATACCAGACAAACTCCAAGTCAAGCTTAGAAGTGCATGTAAAATCAAAACATCTGAAACAAACAGATTATAAATGCGCAGAGTGTGAATACCAGACAAACTACAAGCCGCATTTACAAGCACACACAAAAACAAAACATCTGAAACAAAAGGATTTAAAATGCGCAGAGTGTGAATACCAGACAAACAACAAGTCAAGCTTAGAAGTGCACATAAAAACAAAACATCTGAAACAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACTACAAGTCAAGCTTAGAAGTGCACATAAAAACAAAACATCTGAAACAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACTTGAAGTCAAACGTAAAACGGCACGTAAAATCAAAACATCTGAAACAAAGTGATTATAAATGCGCAGAATGTGAATACCAGACACACTCCAAGTCAAGCTTAGAAATGCATGTAAAATCAAAACATCTGAAACAAAAAGATTATAAATGCGCAGAGTGTGAATACCAAACAAACTACAAGCCGCATTTACAAGCACACACAAAAACAAAACATCTGAAACAAATGGATTTAAAATGCGCAGAGTGTGAATACCAGACAAACAACAAGTCAAGCTTAGAAGTGCACATAAAAACAAAACATCTGAAACAAAATGATTATAAATGCACAGAGTGTGAATACCAGACAAACTACAAGTCAAGCTTAGAAGTGCACATAAAAACAAAACATCTGAAACAAAATGATTATAAATGCGTAGAGTGTGAATACCAGACAAACTTGAAGTCAAACGTAAAACGGCACGTAAAATCAAAACATCTGAAACAAAGTGATTATAAATGCGCAGAATGTGAATATCAGACACACTCCAAGTCAAGCTTAGAAATGCATGTAAAATCAAAACATCTGAAACAAAAAGATTATAAATGCGCAGAGTGTGAATACCAAACAAACTACAAGCCGCATTTACAAGCACACACAAAAACAAAACATCTGAAACAAATGGATTTAAAATGCGCAGAGTGTGAATACCAGACAAACAACAAGTCAAACTTAGAAGTGCACGTAAAAACAAAACATCTGAAACAGTGTGATTATAAATGCACAGAGTGTGAATACCAGACAAACTACAAGTCAAACTTAGAACTGCACATAAAAACAAAACATCTGAAACAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACTTGAAGTCAAACGTAAAACGGCACGTAAAATCAAAACATCTGAAACAAAGTGATTATAAATGCGCAGAATGTGAATACCAGACACACTCCAAGTCAAGCTTAGAAGTGCATGTAAAATCAAAACATCTGAAACAAAATGATTATAAATGCACAGAGTGTGAATACCAGACAAACTACAAGTCAAACTTAGAACTGCACATAAAAACAAAACATCTGAAACAAAATGATTATAAATGCACAGAGTGCAAATACCAGACAAACAGCAAGTCAAACTTAGAAGTGCACGTAAAAACAAAACATCTGAAACAGTGTGATTATAAATGCGCAGAGTGTGAATACCAGACAAACTACAAGTCAAGCTTAGAAGTGCATGCAAAATCAAAACATCTGAAACAAAAAGATTATAAATGCGCAGAGTGTGAATACCAAACATACTCCAAGTCAAGCTTAGAAGTGCATGTAAAATCAAAAGATCTGAAACAAAATGATTATAAATGCGCAGAGTGTGAATACCAGACAAACTTCAAATCAAACTTAAAAGTGCACGTAAAATCAAAACATCTGAAACAAAATGATTATAAATGCGCAGAATGTGAATACCAGACATACCACAAGTCAAACTTAGAAGTGCACGTAAAATCAAAACATCTGAAACAAAGTGATTATAAATGCGCAGAGTGTGAATACCAGACAAACATGAAGTCAAACTTAAAAGTGCACGTAAAATCAAAACATCTGAAACAAAATGATTATAAATGCGCAGAGTGTGAATATCAGACAAACTACAAGTCAAGCTTAGAATTGCACGTAAAATCAAAACATCTGAAACAAAATGATTATAAATGCATGAAGTGTGAATTCCAGACAATCTACAAGACAGTCTTAGAAAGACACGTAAAAACAATACATCTGAAACAATATGATTATAAATGCGTAGAATGTGAATATCAGACAAACTACAAGTTACACTTAGAAGCGCACCTAAAGACAAAACATCTTAAACAAAATGACTATAAGTGCATGAAATGTGAATTCAAGACAAACTACAAGGCGGGCTTAGGAAGACACGTAAAAACAAAACATCTGAAACAATAA
- Protein Sequence
- MYKCTQCKFRTVYSADFRHHTNKHYEMKMYKCGICDRRYKTRGFLKMHVEKNHAENEGREFEKYSKCDYFKANIKNIKGKSLHSHDGKKHCQSSKYKFQNRDKCHLKSLIKIKHLNRGKYKCANCEFKTYYRAYLEMHMKMKHLTIEADYKCMKCEFKTNYKSALERHVKTKHLKQKYYKCVECEHQTNYKPHLQAHPKTKHLKQNVYKCAECEYQTNNKSNLEGHVKTKHLKQNDYKCAECEYQTNSKSSLEVHVKSKHLKQTDYKCAECEYQTNYKPHLQAHTKTKHLKQKDLKCAECEYQTNNKSSLEVHIKTKHLKQNDYKCAECEYQTNYKSSLEVHIKTKHLKQNDYKCAECEYQTNLKSNVKRHVKSKHLKQSDYKCAECEYQTHSKSSLEMHVKSKHLKQKDYKCAECEYQTNYKPHLQAHTKTKHLKQMDLKCAECEYQTNNKSSLEVHIKTKHLKQNDYKCTECEYQTNYKSSLEVHIKTKHLKQNDYKCVECEYQTNLKSNVKRHVKSKHLKQSDYKCAECEYQTHSKSSLEMHVKSKHLKQKDYKCAECEYQTNYKPHLQAHTKTKHLKQMDLKCAECEYQTNNKSNLEVHVKTKHLKQCDYKCTECEYQTNYKSNLELHIKTKHLKQNDYKCAECEYQTNLKSNVKRHVKSKHLKQSDYKCAECEYQTHSKSSLEVHVKSKHLKQNDYKCTECEYQTNYKSNLELHIKTKHLKQNDYKCTECKYQTNSKSNLEVHVKTKHLKQCDYKCAECEYQTNYKSSLEVHAKSKHLKQKDYKCAECEYQTYSKSSLEVHVKSKDLKQNDYKCAECEYQTNFKSNLKVHVKSKHLKQNDYKCAECEYQTYHKSNLEVHVKSKHLKQSDYKCAECEYQTNMKSNLKVHVKSKHLKQNDYKCAECEYQTNYKSSLELHVKSKHLKQNDYKCMKCEFQTIYKTVLERHVKTIHLKQYDYKCVECEYQTNYKLHLEAHLKTKHLKQNDYKCMKCEFKTNYKAGLGRHVKTKHLKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00989795; iTF_00989751; iTF_00989816; iTF_00989819;
- 90% Identity
- -
- 80% Identity
- -