Mmel076889.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000645.1:104812-106938[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.04 4.6 11.3 2.0 1 23 74 97 74 97 0.97 2 21 0.0032 0.38 14.7 0.4 1 23 103 126 103 126 0.96 3 21 0.00063 0.073 17.0 0.7 1 23 132 155 132 155 0.98 4 21 0.00083 0.096 16.6 3.3 1 23 161 184 161 184 0.98 5 21 0.00031 0.036 18.0 1.7 1 23 190 213 190 213 0.98 6 21 4e-05 0.0046 20.8 0.9 1 23 219 242 219 242 0.98 7 21 0.0029 0.34 14.9 5.2 1 23 248 271 248 271 0.98 8 21 0.00031 0.037 17.9 1.7 1 23 277 300 277 300 0.98 9 21 0.0025 0.29 15.1 0.4 1 23 306 329 306 329 0.98 10 21 0.00072 0.084 16.8 4.5 1 23 335 358 335 358 0.98 11 21 0.00031 0.036 18.0 1.7 1 23 364 387 364 387 0.98 12 21 4e-05 0.0046 20.8 0.9 1 23 393 416 393 416 0.98 13 21 0.015 1.7 12.6 1.5 1 23 422 445 422 445 0.98 14 21 0.0034 0.4 14.7 2.7 1 23 451 474 451 474 0.98 15 21 0.004 0.47 14.4 5.4 1 23 480 503 480 503 0.98 16 21 0.00094 0.11 16.4 3.1 1 23 509 532 509 532 0.98 17 21 7.6e-05 0.0089 19.9 1.5 1 23 538 561 538 561 0.96 18 21 0.00027 0.032 18.1 1.4 1 23 567 590 567 590 0.98 19 21 0.0047 0.55 14.2 1.1 1 23 596 619 596 619 0.96 20 21 0.00021 0.025 18.5 2.1 1 23 625 648 625 648 0.98 21 21 0.00022 0.025 18.4 1.9 1 23 654 677 654 678 0.96
Sequence Information
- Coding Sequence
- ATGGGTTTAATCACAGAGCTCACTTTGAATACGTGTATTCTTATCGATATATCGTTTACAATCCCAACAATGACTAATTATAAGCAAATTTTATTAGTTGCAGATGCGATAAAAATACACCAGATAATACCAAAACTACATAACGTATCCAGTGTATCTCCTGCACCCGAGTTTTACGAACTAGAAGTAGAAAGGCGTTCATCCCCAAGAAGCAAGGATTATAAATGCATTGAGTGTGAATTCAAGACAAATCGCAAGTCACACTTAGAAGGACACATAAAGACAATACATCTTAAAGTGACAGATTATAAATGCGTAGAGTGTGACTACAAGACAAACCTTAAGTCAAGTTTAGAAAGTCACATAAAGGCAATACATCCTAAAGTAATCGATTACAAGTGCGCAGAGTGTGAATACAAGACAAATCGCAAGTCATACTTAGAAGGACACATAAAGACAATACATCTTAAAGTAAGCGATTATAAATGCGTGGAGTGTGAATACAAGACAAACAACAAGCAACATCTAAAAAATCACATAAAGACAATACATCTTAAAGTAGCCGATTATAAATGCGCAGAGTGTGAATACAAGATAAACCATAAGTCAAGTTTAGAAAGACACATAAAAACAATACATCTTAAAGTGATCGATTATAAATGCGCCGAGTGTGAATACAAGACAAACAATAAGTCAAGTTTAGAAAGGCACATAAAGACAATACATCTTAAAGTAACCGATTATAAATGCGCAGAGTGTGAATACAAGACAAACCACAAGCAACATCTAAAAAATCACATAAAGACAATACATCTTAAAGTAGCCGATTATAAATGCGCAGAGTGTGAATACAAGACAAACCATAAGCCAAATTTAGAAAAACACATAAAGACAATACATCTTAAAGTAAGCGATTATAAATGCGCAGATTGTGAATACGGGACAAACAGAAAGCTATATTTAGAAAATCACATAAAGACAATACATCTTAAAGTCACCGATTATAAATGCGCGGAGTGTGAATACAAGACAAACCACAAGCAACATTTAGAAAAGCACATAAGGACAATACATCTTAAAGTAGCCGATTATAAATGCGCAGAGTGTGAATACAAGATAAACCATAAGTCAAGTTTAGAAAGACACATAAAAACAATACATCTTAAAGTGATCGATTATAAATGCGCAGAGTGTGAATACAAGACAAACAATAAGTCAAGTTTAGAAAGGCACATAAAGACAATACATCTTAAAGTAACCGATTATAAATGCGCAGAGTGTGAATACAAGACAAACCACAAGCAACTTTTAGAAAATCACGTAAGTACAGTACATCTTAAAGTAGTCGATTATAAGTGCGCGCAGTGTGCATTCAAGACAAACCATAAGTCAAGTTTAGAAAGACACATAAAGACAATACATCTTAAAGTAGTCGATTATAAATGCGCGGAGTGTGAATACAAGACAAACCACAAGCAACATTTAAAAACTCACATAAAGACTATCCATCTTAAAGTAGTCGATTATAAGTGCGCAGAGTGTGAATACAAGACAAACCAGAAGCAACATTTAAAAAGTCACATAAAGACAATACACCTTAAAGTAGCCGATTATAAATGCGCAGAGTGTGAATACATAACAAACAACAAATCACATTTACAAAGACACATGAAGGGAATACATCTTAAAGTATGCGAGTATACATGCGCAGAGTGTGAATACAAGACAAACCATAAGTCAAGTTTAGAAAGGCACATAAAAATAATACATCTTAAACCAAGCGATTATAAATGCGTAGAGTGCGAATACAAGACAAACCACAAACCAAATTTAGAAAATCACTTAAAGGCAATACATCTTAAAGCAACCGATTATAAATGCGCAGAGTGTGAATACAAGACAAACTATAAGTCAAGTTTAAAAAGACACCTAAAGACAATACATCTTAGAGAACGCGATTATAAATGTCCAGAGTGTGAATACAAGACAAATTCTAAGTTTAATTTGGAAAAACATATCAAGGCGATACATCATAAACGCATGAAGTTCAAGACGAGTCGCAAGTGA
- Protein Sequence
- MGLITELTLNTCILIDISFTIPTMTNYKQILLVADAIKIHQIIPKLHNVSSVSPAPEFYELEVERRSSPRSKDYKCIECEFKTNRKSHLEGHIKTIHLKVTDYKCVECDYKTNLKSSLESHIKAIHPKVIDYKCAECEYKTNRKSYLEGHIKTIHLKVSDYKCVECEYKTNNKQHLKNHIKTIHLKVADYKCAECEYKINHKSSLERHIKTIHLKVIDYKCAECEYKTNNKSSLERHIKTIHLKVTDYKCAECEYKTNHKQHLKNHIKTIHLKVADYKCAECEYKTNHKPNLEKHIKTIHLKVSDYKCADCEYGTNRKLYLENHIKTIHLKVTDYKCAECEYKTNHKQHLEKHIRTIHLKVADYKCAECEYKINHKSSLERHIKTIHLKVIDYKCAECEYKTNNKSSLERHIKTIHLKVTDYKCAECEYKTNHKQLLENHVSTVHLKVVDYKCAQCAFKTNHKSSLERHIKTIHLKVVDYKCAECEYKTNHKQHLKTHIKTIHLKVVDYKCAECEYKTNQKQHLKSHIKTIHLKVADYKCAECEYITNNKSHLQRHMKGIHLKVCEYTCAECEYKTNHKSSLERHIKIIHLKPSDYKCVECEYKTNHKPNLENHLKAIHLKATDYKCAECEYKTNYKSSLKRHLKTIHLRERDYKCPECEYKTNSKFNLEKHIKAIHHKRMKFKTSRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -